Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7886

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7885: 16253 - KOG0137 Very-long-chain acyl-CoA dehydrogenase, at 1298396 to 1300627 16253 mRNA_7886: 16254 - KOG2913 Predicted membrane protein, at 1300856 to 1302140 16254 mRNA_7887: 16255 - HMMPfam-Uncharacterized conserved protein (DUF2183)-PF09949, at 1302822 to 1306124 16255

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,300,073 - 16253 mRNA_7885 0.75 -0.4
1,300,074 - 16253 mRNA_7885 0.75 -0.0
1,300,118 - 16253 mRNA_7885 0.77 0.5
1,300,123 + 16253 mRNA_7885 0.77 0.6
1,300,145 - 16253 mRNA_7885 0.78 -0.2
1,300,244 - 16253 mRNA_7885 0.83 -0.7
1,300,256 - 16253 mRNA_7885 0.83 -0.0
1,300,268 + 16253 mRNA_7885 0.84 0.0
1,300,275 + 16253 mRNA_7885 0.84 -0.0
1,300,282 - 16253 mRNA_7885 0.84 -0.8
1,300,298 + 16253 mRNA_7885 0.85 -0.3
1,300,301 - 16253 mRNA_7885 0.85 0.0
1,300,310 - 16253 mRNA_7885 0.86 0.7
1,300,381 - 16253 mRNA_7885 0.89 0.3
1,300,384 + 16253 mRNA_7885 0.89 -1.2
1,300,405 - 0.4
1,300,432 + 0.7
1,300,443 - 0.5
1,300,463 - -1.0
1,300,494 + -0.1
1,300,592 + -0.1
1,300,736 + -0.8
1,300,850 + -0.7
1,301,253 - 16254 mRNA_7886 0.31 -0.2
1,301,409 + 16254 mRNA_7886 0.43 -1.0
1,301,422 + 16254 mRNA_7886 0.44 -0.8
1,301,435 + 16254 mRNA_7886 0.45 0.4
1,301,575 - 16254 mRNA_7886 0.56 0.0
1,301,876 + 16254 mRNA_7886 0.79 -0.1
1,301,888 - 16254 mRNA_7886 0.80 1.6
1,302,011 - 16254 mRNA_7886 0.90 0.7
1,302,129 - -0.6
1,302,139 - 0.1
1,302,145 - -1.0
1,302,323 + -0.2
1,302,328 + 0.3
1,302,340 - -1.9
1,302,347 + -0.5
1,302,761 - -0.9
1,302,768 - 0.2
1,302,790 + -1.0
1,302,801 + 0.7
1,302,804 - 0.5
1,302,820 + 0.4