Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7809

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7808: 16176 - K20183 VPS39, VAM6 Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39, at 1117423 to 1121551 16176 mRNA_7809: 16177 - Hypothetical Protein, at 1121934 to 1122810 16177 mRNA_7810: 16178 - K02358 tuf, TUFM elongation factor Tu, at 1123749 to 1125478 16178

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,121,241 + -0.4
1,121,394 + 0.4
1,121,413 - 0.2
1,121,556 + -1.2
1,121,578 - -0.3
1,121,594 + 0.3
1,121,720 - 2.3
1,121,725 + -1.1
1,121,737 - -0.6
1,121,854 + -0.6
1,121,981 - -1.6
1,122,170 - 16177 mRNA_7809 0.27 -0.2
1,122,171 + 16177 mRNA_7809 0.27 0.1
1,122,200 + 16177 mRNA_7809 0.30 0.4
1,122,262 - 16177 mRNA_7809 0.37 -0.4
1,122,265 - 16177 mRNA_7809 0.38 -0.2
1,122,280 - 16177 mRNA_7809 0.39 -1.0
1,122,299 + 16177 mRNA_7809 0.42 -0.2
1,122,310 - 16177 mRNA_7809 0.43 -0.3
1,122,315 + 16177 mRNA_7809 0.43 1.1
1,122,323 + 16177 mRNA_7809 0.44 0.1
1,122,349 - 16177 mRNA_7809 0.47 -0.2
1,122,368 - 16177 mRNA_7809 0.49 0.5
1,122,377 + 16177 mRNA_7809 0.51 -1.1
1,122,392 + 16177 mRNA_7809 0.52 0.4
1,122,402 + 16177 mRNA_7809 0.53 0.8
1,122,418 + 16177 mRNA_7809 0.55 0.1
1,122,418 - 16177 mRNA_7809 0.55 0.4
1,122,420 - 16177 mRNA_7809 0.55 0.7
1,122,429 - 16177 mRNA_7809 0.56 0.4
1,122,443 + 16177 mRNA_7809 0.58 0.6
1,122,444 - 16177 mRNA_7809 0.58 -0.5
1,122,449 + 16177 mRNA_7809 0.59 -0.8
1,122,453 - 16177 mRNA_7809 0.59 0.3
1,122,460 + 16177 mRNA_7809 0.60 0.4
1,122,460 + 16177 mRNA_7809 0.60 0.5
1,122,487 - 16177 mRNA_7809 0.63 0.3
1,122,508 - 16177 mRNA_7809 0.65 -0.8
1,122,510 - 16177 mRNA_7809 0.66 -0.3
1,122,527 - 16177 mRNA_7809 0.68 0.1
1,122,530 - 16177 mRNA_7809 0.68 -1.1
1,122,532 + 16177 mRNA_7809 0.68 -0.8
1,122,535 + 16177 mRNA_7809 0.69 0.9
1,122,545 + 16177 mRNA_7809 0.70 0.9
1,122,574 - 16177 mRNA_7809 0.73 -0.3
1,122,576 - 16177 mRNA_7809 0.73 -0.3
1,122,583 + 16177 mRNA_7809 0.74 -0.5
1,122,583 + 16177 mRNA_7809 0.74 0.3
1,122,586 - 16177 mRNA_7809 0.74 -1.2
1,122,598 - 16177 mRNA_7809 0.76 0.1
1,122,654 - 16177 mRNA_7809 0.82 1.2
1,122,669 + 16177 mRNA_7809 0.84 0.1
1,122,751 - -0.6
1,122,759 - 0.3
1,122,790 + -0.1
1,123,022 + 0.8
1,123,062 - -0.7
1,123,082 + 0.0
1,123,185 - 0.5
1,123,188 - 0.2
1,123,204 + -0.4
1,123,342 + 0.0
1,123,346 - -0.3
1,123,348 + -0.6
1,123,348 + -0.1
1,123,362 + -0.4
1,123,363 + -0.8
1,123,373 + 0.5
1,123,374 - 0.9
1,123,383 + 0.1