Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7783

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7782: 16150 - Hypothetical Protein, at 1057267 to 1057848 16150 mRNA_7783: 16151 - HMMPfam-Mitochondrial carrier protein-PF00153,SUPERFAMILY--SSF103506, at 1058702 to 1060371 16151 mRNA_7784: 16152 - HMMPfam-Tetratricopeptide repeat-PF00515,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat profile.-PS50005,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452, at 1060507 to 1063006 16152

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,057,780 - 16150 mRNA_7782 0.88 -0.1
1,057,783 - 16150 mRNA_7782 0.89 -0.2
1,057,942 + 0.2
1,057,957 - 0.1
1,058,075 - 0.1
1,058,283 - 0.1
1,058,378 + 0.5
1,059,787 - 16151 mRNA_7783 0.65 -0.6
1,060,126 + 16151 mRNA_7783 0.85 -0.5
1,060,136 - 16151 mRNA_7783 0.86 -1.5
1,060,255 - -3.1
1,060,265 + -0.5
1,060,271 + -1.4
1,060,271 - -0.5
1,060,274 + -0.7
1,060,285 + -1.2
1,060,400 - -0.4
1,060,428 - -0.6
1,060,439 + -0.3
1,060,705 + -0.7
1,060,730 + 0.7
1,061,087 + 16152 mRNA_7784 0.23 2.2
1,061,160 + 16152 mRNA_7784 0.26 1.0