Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7775

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7774: 16142 - KOG1546 Metacaspase involved in regulation of apoptosis, at 1033598 to 1035909 16142 mRNA_7775: 16143 - K01673 cynT, can carbonic anhydrase, at 1036773 to 1037366 16143 mRNA_7776: 16144 - K01899 LSC1 succinyl-CoA synthetase alpha subunit, at 1037588 to 1039295 16144

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,036,197 + -0.8
1,036,213 - -0.5
1,036,214 - 1.4
1,036,215 - 0.1
1,036,217 - 0.2
1,036,233 + -0.7
1,036,243 - 0.6
1,036,245 + 1.3
1,036,349 - 0.4
1,036,944 + 16143 mRNA_7775 0.29 -0.7
1,036,946 + 16143 mRNA_7775 0.29 -0.2
1,036,953 + 16143 mRNA_7775 0.30 -2.2
1,037,236 + 16143 mRNA_7775 0.78 -0.2
1,037,239 - 16143 mRNA_7775 0.78 -0.1
1,037,250 + 16143 mRNA_7775 0.80 1.3
1,037,251 - 16143 mRNA_7775 0.80 -0.2
1,037,254 + 16143 mRNA_7775 0.81 -0.7
1,037,265 + 16143 mRNA_7775 0.83 0.2
1,037,375 + -0.3
1,037,386 + -0.0
1,037,507 + -1.0
1,037,516 - 0.3
1,037,518 - 0.3
1,037,520 - -0.3
1,037,539 + -0.1
1,037,541 + 0.1
1,037,545 + -0.0
1,037,545 - -0.6
1,037,549 + -0.2
1,037,557 - -0.7
1,037,564 - -0.3