Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7709

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7708: 16076 - Hypothetical Protein, at 900056 to 901517 16076 mRNA_7709: 16077 - K19877 CHS5 chitin biosynthesis protein CHS5, at 902207 to 904253 16077 mRNA_7710: 16078 - K06067 HDAC1_2 histone deacetylase 1/2, at 904428 to 906811 16078

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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901,471 + 0.1
901,486 + 1.5
901,504 + 0.2
901,505 + 0.7
901,509 + -1.3
901,509 + 0.2
901,522 - -0.3
901,524 + -0.4
901,544 - 0.5
901,547 + -0.1
901,607 + 0.4
901,617 - -0.7
901,635 - -0.5
901,668 - -0.0
901,669 - -1.3
901,677 - -0.5
901,680 - -0.0
901,683 + -0.1
901,694 + -0.0
901,695 - -0.3
901,695 + -0.1
901,696 - 0.0
901,697 - 0.3
901,699 - -0.9
901,705 - -0.7
901,735 - -0.1
901,736 + 0.6
901,737 - -0.9
901,738 + -0.3
901,738 + 1.6
901,738 + -1.9
901,739 + 0.1
901,743 - -1.0
901,749 - 0.0
901,750 - -0.1
901,757 + -1.3
901,776 - 1.8
901,778 + 0.8
901,781 - -0.3
901,782 + -1.2
901,787 - -0.1
901,787 + 0.4
901,800 + -0.4
901,802 - 0.1
901,803 + -1.4
901,813 + -0.9
901,815 + 0.7
901,820 - -0.4
901,828 - -0.3
901,854 - -0.1
901,860 - 0.2
901,862 - -0.2
901,866 - 0.2
901,888 + -0.0
901,925 - -0.1
901,946 - -0.2
901,959 - -0.2
901,962 + 0.7
901,962 - -0.9
901,964 + 0.2
901,965 - -0.0
901,971 + -0.5
901,977 + -0.3
901,991 + -0.3
901,992 - 0.5
902,011 + -0.1
902,100 - 0.2
902,102 - 0.2
902,104 + 0.2
902,156 + 0.4
902,254 - -0.2
902,398 + 0.1
902,723 - 16077 mRNA_7709 0.25 -0.1
902,730 + 16077 mRNA_7709 0.26 -1.9
902,975 - 16077 mRNA_7709 0.38 0.1
903,123 + 16077 mRNA_7709 0.45 1.1
903,446 - 16077 mRNA_7709 0.61 -0.1
903,978 + 16077 mRNA_7709 0.87 -0.9
903,998 + 16077 mRNA_7709 0.87 0.1
904,137 + 1.4
904,248 - 0.9
904,263 - -1.1