Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7615

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7614: 15982 - K14156 CHK choline/ethanolamine kinase, at 677486 to 680218 15982 mRNA_7615: 15983 - K06678 YCG1, CAPG condensin complex subunit 3, at 680522 to 684221 15983 mRNA_7616: 15984 - K00706 E2.4.1.34 1,3-beta-glucan synthase, at 684881 to 690807 15984

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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679,564 - 15982 mRNA_7614 0.76 0.8
679,564 - 15982 mRNA_7614 0.76 1.5
679,792 + 15982 mRNA_7614 0.84 0.7
679,969 + 0.8
679,975 - 1.0
679,992 + -0.0
680,228 - -0.7
680,250 - -0.1
680,251 + -0.5
680,255 + 1.0
680,289 - 0.1
680,289 - 1.7
680,289 + -0.8
680,290 + -0.2
680,295 - 0.5
680,299 - 0.4
680,305 + 0.9
680,305 + 0.8
680,324 + -0.2
680,450 + -0.0
681,979 + 15983 mRNA_7615 0.39 2.1
682,408 + 15983 mRNA_7615 0.51 0.0
684,169 + 0.0
684,331 - -0.1
684,354 + 0.1
684,492 + 0.2
684,626 - 0.1
684,631 - -0.9
684,631 - 1.0
684,634 - -1.0
684,642 + 1.2
684,643 - -0.3
684,644 - -0.6
684,648 - 0.4
684,652 + -1.5
684,653 + 0.3
684,656 - -1.2
684,658 + 0.9
684,662 + -0.1
684,668 + 0.9
684,668 + -1.7
684,669 + 1.0
684,671 + -0.3
684,676 - 0.3
684,680 - 0.2
684,681 + -0.7
684,794 - -0.2
684,806 - 0.5
684,817 - -1.9
684,822 + -0.9
684,852 + 1.0