Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7555

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7554: 15922 - K07359 CAMKK calcium/calmodulin-dependent protein kinase kinase, at 548985 to 552468 15922 mRNA_7555: 15923 - K00463 IDO, INDO indoleamine 2,3-dioxygenase, at 552807 to 554579 15923 mRNA_7556: 15924 - K12734 PPIL3 peptidyl-prolyl cis-trans isomerase-like 3, at 554930 to 556179 15924

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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552,162 + -0.4
552,288 + -0.9
552,296 - -0.3
552,437 - 0.5
552,495 + -0.9
552,515 + -0.4
552,879 - -0.1
552,914 + -0.2
552,914 - -0.4
553,148 + 15923 mRNA_7555 0.19 0.2
553,193 + 15923 mRNA_7555 0.22 -0.3
553,207 + 15923 mRNA_7555 0.23 0.6
553,432 - 15923 mRNA_7555 0.35 1.4
553,477 - 15923 mRNA_7555 0.38 -0.0
553,489 - 15923 mRNA_7555 0.38 0.4
553,612 + 15923 mRNA_7555 0.45 0.0
553,794 + 15923 mRNA_7555 0.56 -0.1
553,805 + 15923 mRNA_7555 0.56 0.6
554,056 - 15923 mRNA_7555 0.70 -0.9
554,195 - 15923 mRNA_7555 0.78 -0.3
554,231 + 15923 mRNA_7555 0.80 0.5
554,501 - -0.2
554,503 - -0.0
554,648 + -0.1
554,655 - 0.0
554,671 - 0.3
554,777 + 2.0
554,799 + 0.1
554,812 - 0.1
554,819 + 0.1
554,819 + -0.5
554,822 - 0.3
554,832 + 0.2
554,851 + -0.2
554,997 - -0.0
555,257 - 15924 mRNA_7556 0.26 0.5
555,421 + 15924 mRNA_7556 0.39 -0.0