Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7542

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7541: 15909 - K04564 SOD2 superoxide dismutase, Fe-Mn family, at 524745 to 525930 15909 mRNA_7542: 15910 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 526059 to 527753 15910 mRNA_7543: 15911 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 528025 to 529460 15911

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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525,118 + 15909 mRNA_7541 0.31 -1.9
525,147 + 15909 mRNA_7541 0.34 -2.6
525,173 - 15909 mRNA_7541 0.36 0.1
525,181 - 15909 mRNA_7541 0.37 -2.9
525,186 - 15909 mRNA_7541 0.37 -3.2
525,225 + 15909 mRNA_7541 0.40 -0.4
525,230 + 15909 mRNA_7541 0.41 -2.1
525,266 - 15909 mRNA_7541 0.44 -2.6
525,290 + 15909 mRNA_7541 0.46 -2.1
525,510 - 15909 mRNA_7541 0.65 -2.3
525,584 - 15909 mRNA_7541 0.71 -1.7
525,614 - 15909 mRNA_7541 0.73 -1.4
525,654 - 15909 mRNA_7541 0.77 -2.1
525,670 + 15909 mRNA_7541 0.78 -1.6
525,779 - 15909 mRNA_7541 0.87 -2.9
525,854 - -3.1
525,929 - -2.5
526,365 - 15910 mRNA_7542 0.18 -0.4
526,381 - 15910 mRNA_7542 0.19 -0.2
526,812 + 15910 mRNA_7542 0.44 -0.3
527,125 - 15910 mRNA_7542 0.63 0.3
527,132 - 15910 mRNA_7542 0.63 0.5
527,700 + -0.2
528,416 - 15911 mRNA_7543 0.27 0.5
528,425 - 15911 mRNA_7543 0.28 0.8