Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7520

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7519: 15887 - HMMPfam-Protoglobin-PF11563, at 481240 to 482191 15887 mRNA_7520: 15888 - K18725 POM152 nucleoporin POM152, at 482849 to 487263 15888 mRNA_7521: 15889 - K18624 MAEA, EMP macrophage erythroblast attacher, at 487379 to 489204 15889

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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481,971 - 15887 mRNA_7519 0.77 1.4
482,206 - 0.8
482,230 - 0.0
482,330 - -1.3
482,350 - 0.9
482,364 - -1.2
482,398 - 0.2
482,423 + -1.4
482,429 - 0.1
482,467 - -0.2
482,481 + 1.2
482,494 - -0.9
482,495 - -0.3
482,504 + 0.4
482,508 + 0.9
482,510 + -2.0
482,517 + -0.6
482,522 + 0.1
482,544 + -0.4
482,561 - -0.9
482,622 - -0.9
482,657 + -0.1
482,664 - -0.5
482,666 - 0.2
482,703 - -0.6
482,710 - -0.3
482,722 - 1.2
482,731 + 0.1
482,734 - -0.0
482,736 - 0.3
482,750 + 0.7
482,847 + -0.4
482,849 - 0.2
482,852 + 0.8
482,863 + -0.6
482,873 + -1.2
482,884 - 0.1
482,891 + 0.8
482,907 + -0.5
482,917 + 0.7
483,066 + 0.9
483,165 + 0.5
483,169 + 0.1
483,231 + 0.2
483,323 - 15888 mRNA_7520 0.11 0.6
483,439 - 15888 mRNA_7520 0.13 0.3
483,445 - 15888 mRNA_7520 0.13 0.3
483,452 - 15888 mRNA_7520 0.14 -1.6
483,771 + 15888 mRNA_7520 0.21 0.1
484,041 - 15888 mRNA_7520 0.27 -1.1
484,044 + 15888 mRNA_7520 0.27 -0.1
484,317 + 15888 mRNA_7520 0.33 0.2
484,802 - 15888 mRNA_7520 0.44 0.3
485,368 + 15888 mRNA_7520 0.57 -0.1
485,388 + 15888 mRNA_7520 0.58 -0.9
485,729 + 15888 mRNA_7520 0.65 0.3
485,995 - 15888 mRNA_7520 0.71 0.4
486,031 - 15888 mRNA_7520 0.72 1.2
486,038 + 15888 mRNA_7520 0.72 0.1
486,886 - -0.1
486,895 - -0.2
487,006 + -0.3
487,029 - 0.2
487,043 + 0.2
487,175 + -0.5
487,176 - 0.5
487,336 - -0.7
487,437 - -0.3
487,474 - -0.3
487,476 + -0.5
487,628 + 15889 mRNA_7521 0.14 0.5
487,642 - 15889 mRNA_7521 0.14 1.0
487,753 + 15889 mRNA_7521 0.20 1.0
487,758 - 15889 mRNA_7521 0.21 -0.1
487,774 - 15889 mRNA_7521 0.22 -2.1
487,779 + 15889 mRNA_7521 0.22 0.8