Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7326

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7325: 15693 - K01640 E4.1.3.4, HMGCL, hmgL hydroxymethylglutaryl-CoA lyase, at 10926 to 12277 15693 mRNA_7326: 15694 - K01969 E6.4.1.4B 3-methylcrotonyl-CoA carboxylase beta subunit, at 12485 to 14861 15694 mRNA_7327: 15695 - KOG2883 NIPSNAP1 protein, at 15080 to 16504 15695

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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11,501 - 15693 mRNA_7325 0.43 0.1
11,631 - 15693 mRNA_7325 0.52 0.1
11,788 + 15693 mRNA_7325 0.64 -0.1
11,919 + 15693 mRNA_7325 0.73 -1.4
12,049 - 15693 mRNA_7325 0.83 -0.4
12,066 - 15693 mRNA_7325 0.84 0.9
12,198 - -0.2
12,204 - -0.4
12,223 + 0.6
12,348 + 1.6
12,348 - -1.1
12,349 + -0.4
12,355 - 0.1
12,358 + -1.3
12,360 + 1.4
12,366 - 0.2
12,406 - -0.7
12,528 - -0.3
12,547 - 0.6
13,043 - 15694 mRNA_7326 0.23 0.6
13,147 - 15694 mRNA_7326 0.28 0.3
13,160 + 15694 mRNA_7326 0.28 -1.3
13,270 + 15694 mRNA_7326 0.33 1.2
13,528 + 15694 mRNA_7326 0.44 -0.8
13,751 + 15694 mRNA_7326 0.53 -0.4
14,287 - 15694 mRNA_7326 0.76 0.6
14,307 + 15694 mRNA_7326 0.77 -0.1
14,508 + 15694 mRNA_7326 0.85 -0.6
14,779 + -0.1
14,794 - 1.1
14,908 + 0.5
14,911 - 0.4
14,911 - -0.0
14,920 + 0.1
14,945 - -0.5
14,945 - -0.5
14,958 + 0.8
14,972 + 1.3
14,989 + 0.4
14,993 + -0.2
15,064 - 0.0
15,090 - -1.6
15,104 + -0.2
15,370 - 15695 mRNA_7327 0.20 -0.9
15,373 + 15695 mRNA_7327 0.21 -0.3
15,541 + 15695 mRNA_7327 0.32 0.1
15,545 + 15695 mRNA_7327 0.33 0.5
15,548 + 15695 mRNA_7327 0.33 -0.7
15,721 + 15695 mRNA_7327 0.45 -0.3
15,781 + 15695 mRNA_7327 0.49 -1.0
15,781 - 15695 mRNA_7327 0.49 -0.1