Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7325

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7324: 15692 - K20967 MOCS1 GTP 3',8-cyclase / cyclic pyranopterin monophosphate synthase, at 8009 to 10735 15692 mRNA_7325: 15693 - K01640 E4.1.3.4, HMGCL, hmgL hydroxymethylglutaryl-CoA lyase, at 10926 to 12277 15693 mRNA_7326: 15694 - K01969 E6.4.1.4B 3-methylcrotonyl-CoA carboxylase beta subunit, at 12485 to 14861 15694

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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10,155 - 15692 mRNA_7324 0.79 -2.1
10,487 - 0.5
10,512 + 0.0
10,628 + -0.4
10,746 + -0.1
10,770 + 0.6
11,170 - 15693 mRNA_7325 0.18 -0.0
11,306 - 15693 mRNA_7325 0.28 -0.6
11,501 - 15693 mRNA_7325 0.43 0.1
11,631 - 15693 mRNA_7325 0.52 0.1
11,788 + 15693 mRNA_7325 0.64 -0.1
11,919 + 15693 mRNA_7325 0.73 -1.4
12,049 - 15693 mRNA_7325 0.83 -0.4
12,066 - 15693 mRNA_7325 0.84 0.9
12,198 - -0.2
12,204 - -0.4
12,223 + 0.6
12,348 + 1.6
12,348 - -1.1
12,349 + -0.4
12,355 - 0.1
12,358 + -1.3
12,360 + 1.4
12,366 - 0.2
12,406 - -0.7
12,528 - -0.3
12,547 - 0.6
13,043 - 15694 mRNA_7326 0.23 0.6
13,147 - 15694 mRNA_7326 0.28 0.3
13,160 + 15694 mRNA_7326 0.28 -1.3
13,270 + 15694 mRNA_7326 0.33 1.2