Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7249

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7248: 15616 - HMMPfam-N-acetyltransferase-PF00797,SUPERFAMILY--SSF54001, at 1216413 to 1217523 15616 mRNA_7249: 15617 - Hypothetical Protein, at 1217873 to 1218626 15617 mRNA_7250: 15618 - BLAST ClpP/crotonase [Saitoella complicata NRRL Y-17804], at 1218970 to 1220341 15618

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,216,882 - 15616 mRNA_7248 0.42 0.4
1,216,943 - 15616 mRNA_7248 0.48 0.3
1,216,954 + 15616 mRNA_7248 0.49 -1.0
1,216,955 + 15616 mRNA_7248 0.49 -0.2
1,217,222 + 15616 mRNA_7248 0.73 -0.1
1,217,231 + 15616 mRNA_7248 0.74 0.1
1,217,234 + 15616 mRNA_7248 0.74 0.5
1,217,237 - 15616 mRNA_7248 0.74 0.5
1,217,324 + 15616 mRNA_7248 0.82 -0.5
1,217,561 + 0.4
1,217,614 + 0.9
1,217,687 - 0.3
1,217,698 - -0.1
1,217,698 - 0.0
1,217,701 - -0.2
1,217,712 - -0.6
1,217,718 + 0.2
1,217,723 + -0.1
1,217,727 + -0.7
1,217,793 + 0.0
1,217,804 + -0.3
1,217,856 + 0.1
1,218,028 + 15617 mRNA_7249 0.21 -0.4
1,218,473 - 15617 mRNA_7249 0.80 -1.2
1,218,888 - -0.1
1,218,912 + -0.2
1,218,915 - 0.8
1,219,055 + -0.4
1,219,071 - -0.4
1,219,211 + 15618 mRNA_7250 0.18 -0.1
1,219,243 + 15618 mRNA_7250 0.20 0.4
1,219,247 - 15618 mRNA_7250 0.20 0.6
1,219,248 + 15618 mRNA_7250 0.20 -0.2
1,219,248 + 15618 mRNA_7250 0.20 0.8
1,219,336 - 15618 mRNA_7250 0.27 -0.0
1,219,361 - 15618 mRNA_7250 0.28 -0.1
1,219,373 + 15618 mRNA_7250 0.29 -1.0
1,219,451 + 15618 mRNA_7250 0.35 0.2
1,219,465 + 15618 mRNA_7250 0.36 2.1
1,219,497 + 15618 mRNA_7250 0.38 -1.0
1,219,549 - 15618 mRNA_7250 0.42 -0.2