Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7111

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7110: 15478 - HMMPfam-Zinc-binding dehydrogenase-PF00107,HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SMART-Enoylreductase-SM00829,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 906529 to 908168 15478 mRNA_7111: 15479 - Interpro Subunit 11 of the general transcription factor TFIIH, at 908449 to 909688 15479 mRNA_7112: 15480 - Interpro DNA-directed RNA polymerase I subunit RPA34.5 0, at 910088 to 911391 15480

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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907,823 - 15478 mRNA_7110 0.79 -0.3
907,973 - 15478 mRNA_7110 0.88 -0.2
908,138 + 0.9
908,240 + -0.3
908,244 + 0.9
908,269 - -0.2
908,988 - 15479 mRNA_7111 0.43 0.8
909,154 - 15479 mRNA_7111 0.57 -0.3
909,438 + 15479 mRNA_7111 0.80 1.6
909,592 + -0.2
909,596 + 0.4
909,730 - -0.0
909,751 - 0.8
909,878 - 0.0
909,883 + -0.2
909,885 + -0.6
909,886 - 0.8
909,892 - -0.8
909,897 + 0.2
909,903 + -0.8
909,905 - 0.1
909,906 - -1.0
910,018 + 0.1
910,020 + 0.0
910,029 - -1.0
910,029 + 0.0
910,046 - -0.3
910,068 + -0.4
910,174 - -0.8
910,440 + 15480 mRNA_7112 0.27 -0.3
910,452 - 15480 mRNA_7112 0.28 -0.4
910,535 + 15480 mRNA_7112 0.34 0.7