Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7110

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7109: 15477 - HMMPfam-C2 domain-PF00168,ProSiteProfiles-C2 domain profile.-PS50004,SMART-Protein kinase C conserved region 2 (CalB)-SM00239,SUPERFAMILY--SSF49562, at 903883 to 906158 15477 mRNA_7110: 15478 - HMMPfam-Zinc-binding dehydrogenase-PF00107,HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SMART-Enoylreductase-SM00829,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 906529 to 908168 15478 mRNA_7111: 15479 - Interpro Subunit 11 of the general transcription factor TFIIH, at 908449 to 909688 15479

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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905,785 - 15477 mRNA_7109 0.84 -1.7
905,787 + 15477 mRNA_7109 0.84 0.3
905,817 - 15477 mRNA_7109 0.85 2.6
906,052 - 0.1
906,087 + -0.3
906,127 + -0.5
906,197 - 0.2
906,208 + 0.1
906,644 + -1.4
906,652 + 1.7
907,109 + 15478 mRNA_7110 0.35 0.6
907,380 + 15478 mRNA_7110 0.52 -0.2
907,823 - 15478 mRNA_7110 0.79 -0.3
907,973 - 15478 mRNA_7110 0.88 -0.2
908,138 + 0.9
908,240 + -0.3
908,244 + 0.9
908,269 - -0.2
908,988 - 15479 mRNA_7111 0.43 0.8
909,154 - 15479 mRNA_7111 0.57 -0.3