Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7073

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7072: 15440 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 815614 to 818476 15440 mRNA_7073: 15441 - HMMPfam-Domain of unknown function DUF77-PF01910,SUPERFAMILY--SSF89957,TIGRFAM-TIGR00106 uncharacterized protein, MTH1187 family-TIGR00106, at 819072 to 820252 15441

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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818,269 + 1.0
818,301 - 1.8
818,403 + -0.0
818,587 - 0.3
818,589 - 0.5
818,640 - -0.3
818,733 - 0.0
818,739 + 0.0
818,742 + -0.7
818,757 - -0.5
818,779 - -0.4
818,788 + -0.4
818,802 + -0.6
818,811 - 0.0
818,891 - 0.2
818,982 - -0.0
819,028 - 1.6
819,029 - 0.6
819,032 + -0.3
819,039 + -0.6
819,042 + 1.6
819,451 + 15441 mRNA_7073 0.32 0.4
819,761 - 15441 mRNA_7073 0.58 -0.7
820,057 - 15441 mRNA_7073 0.83 -1.3
820,067 + 15441 mRNA_7073 0.84 -0.8
820,353 + -0.3
820,652 - -1.3
820,839 - -0.8