Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7071

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7070: 15438 - K13953 adhP alcohol dehydrogenase, propanol-preferring, at 812673 to 814209 15438 mRNA_7071: 15439 - BLAST histone H3 h3.1 [Schizosaccharomyces japonicus yF..., at 814580 to 815327 15439 mRNA_7072: 15440 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 815614 to 818476 15440

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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813,730 + 15438 mRNA_7070 0.69 1.4
813,825 + 15438 mRNA_7070 0.75 -0.5
814,067 - -0.5
814,185 + -0.1
814,322 + -1.1
814,333 + -0.0
814,344 - -0.7
814,354 - 0.4
814,357 - 1.0
814,357 + 0.7
814,368 + -0.5
814,407 - 1.2
814,417 - -0.1
814,472 - -0.1
814,478 - -0.0
814,532 + 0.0
814,652 + -0.6
814,665 - 15439 mRNA_7071 0.11 0.6
814,807 - 15439 mRNA_7071 0.30 0.8
814,820 - 15439 mRNA_7071 0.32 1.5
815,260 - -0.5
815,415 + 0.1
815,576 + -2.0