Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6988

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6987: 15355 - BLAST plasma membrane protein [Pseudozyma hubeiensis SY62], at 606395 to 609554 15355 mRNA_6988: 15356 - K00485 FMO dimethylaniline monooxygenase (N-oxide forming), at 609889 to 611754 15356 mRNA_6989: 15357 - K11836 USP5_13, UBP14 ubiquitin carboxyl-terminal hydrolase 5/13, at 611825 to 615054 15357

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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609,018 + 15355 mRNA_6987 0.83 -0.4
609,037 + 15355 mRNA_6987 0.84 0.1
609,134 + 15355 mRNA_6987 0.87 -0.4
609,168 - 15355 mRNA_6987 0.88 -0.3
609,432 + -0.3
609,450 - -0.3
609,482 + -0.5
609,514 + -0.1
609,752 + -1.5
609,761 - 1.1
609,766 - 0.4
609,774 + 0.6
609,775 - 1.4
609,780 + -0.2
609,780 + 1.3
609,795 - -0.4
609,796 - 0.8
609,800 + -0.5
609,805 - 0.6
609,809 + 0.2
609,813 - 0.2
609,816 + -0.9
609,817 - 0.0
609,994 + 0.0
609,997 + -0.4
610,282 - 15356 mRNA_6988 0.21 -1.0
610,520 + 15356 mRNA_6988 0.34 0.0
610,569 - 15356 mRNA_6988 0.36 -0.7
610,863 + 15356 mRNA_6988 0.52 -0.8
610,886 + 15356 mRNA_6988 0.53 -0.3
611,440 - 15356 mRNA_6988 0.83 -1.6
611,583 + -0.0
611,759 - -0.0
612,011 - -1.3
612,030 - -0.8
612,034 + -1.0
612,644 - 15357 mRNA_6989 0.25 -2.8