Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6961

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6960: 15328 - K01469 OPLAH, OXP1, oplAH 5-oxoprolinase (ATP-hydrolysing), at 540769 to 543741 15328 mRNA_6961: 15329 - Hypothetical Protein, at 543904 to 547836 15329 mRNA_6962: 15330 - K03132 TAF7 transcription initiation factor TFIID subunit 7, at 547886 to 549459 15330

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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543,367 + 15328 mRNA_6960 0.87 -0.4
543,625 - 1.8
543,638 - -0.8
543,797 - -0.8
544,113 + 0.5
544,371 - 15329 mRNA_6961 0.12 -1.5
544,494 - 15329 mRNA_6961 0.15 -2.1
544,494 - 15329 mRNA_6961 0.15 0.6
544,506 + 15329 mRNA_6961 0.15 -1.7
544,580 + 15329 mRNA_6961 0.17 -0.0
544,794 - 15329 mRNA_6961 0.23 0.1
544,815 - 15329 mRNA_6961 0.23 -1.5
544,933 - 15329 mRNA_6961 0.26 -0.1
545,008 - 15329 mRNA_6961 0.28 -0.2
545,111 + 15329 mRNA_6961 0.31 0.2
545,401 + 15329 mRNA_6961 0.38 -0.2
545,547 + 15329 mRNA_6961 0.42 -1.3
545,563 + 15329 mRNA_6961 0.42 -0.2
545,654 + 15329 mRNA_6961 0.44 0.5
545,696 - 15329 mRNA_6961 0.46 1.1
545,823 - 15329 mRNA_6961 0.49 -0.5
545,844 - 15329 mRNA_6961 0.49 -0.5
545,846 + 15329 mRNA_6961 0.49 1.2
545,967 + 15329 mRNA_6961 0.52 -0.3
545,996 - 15329 mRNA_6961 0.53 0.4
546,038 + 15329 mRNA_6961 0.54 0.1
546,144 - 15329 mRNA_6961 0.57 -0.5
546,176 + 15329 mRNA_6961 0.58 -0.1
546,176 - 15329 mRNA_6961 0.58 1.6
546,605 - 15329 mRNA_6961 0.69 0.1
547,218 - 15329 mRNA_6961 0.84 0.2
547,237 - 15329 mRNA_6961 0.85 0.9
547,478 + 0.2
547,498 + 0.4
547,613 - 1.1
547,647 + 0.6
547,653 + -2.6
547,662 + -0.7
547,828 + 0.6
548,254 - 15330 mRNA_6962 0.23 -0.5