Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6870

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6869: 15237 - K06125 COQ2 4-hydroxybenzoate polyprenyltransferase, at 314323 to 315416 15237 mRNA_6870: 15238 - K08736 MSH3 DNA mismatch repair protein MSH3, at 315464 to 319765 15238 mRNA_6871: 15239 - K17600 VPS54 vacuolar protein sorting-associated protein 54, at 319945 to 325501 15239

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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315,468 - 2.0
315,627 + 0.1
315,750 + -1.3
315,810 + -0.1
315,919 + 15238 mRNA_6870 0.11 0.7
316,067 - 15238 mRNA_6870 0.14 0.4
316,253 + 15238 mRNA_6870 0.18 0.6
316,473 + 15238 mRNA_6870 0.23 -0.4
316,476 + 15238 mRNA_6870 0.24 0.9
316,590 + 15238 mRNA_6870 0.26 -0.1
316,630 + 15238 mRNA_6870 0.27 0.3
316,712 + 15238 mRNA_6870 0.29 0.7
316,903 + 15238 mRNA_6870 0.33 0.4
316,990 + 15238 mRNA_6870 0.35 -0.1
317,046 - 15238 mRNA_6870 0.37 -1.2
317,145 - 15238 mRNA_6870 0.39 0.6
317,151 + 15238 mRNA_6870 0.39 0.1
317,184 - 15238 mRNA_6870 0.40 1.4
317,214 - 15238 mRNA_6870 0.41 -0.5
317,313 + 15238 mRNA_6870 0.43 -0.3
317,709 + 15238 mRNA_6870 0.52 0.1
317,997 - 15238 mRNA_6870 0.59 1.4
318,359 + 15238 mRNA_6870 0.67 -0.1
318,763 - 15238 mRNA_6870 0.77 -0.6
318,767 + 15238 mRNA_6870 0.77 -0.5
318,906 + 15238 mRNA_6870 0.80 -1.3
319,062 - 15238 mRNA_6870 0.84 -1.9
319,068 + 15238 mRNA_6870 0.84 -0.7
319,527 - -0.7
319,665 - -0.9
319,807 - 0.7
319,809 - 0.5
320,246 + 0.4