Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6737

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6736: 15104 - K11527 K11527 two-component system, sensor histidine kinase and response regulator, at 26533 to 28608 15104 mRNA_6737: 15105 - KOG0516 Dystonin, GAS (Growth-arrest-specific protein), and related proteins, at 29328 to 32887 15105 mRNA_6738: 15106 - Hypothetical Protein, at 32978 to 33241 15106 mRNA_6739: 15107 - BLAST polysaccharide lyase family 14 protein [Mixia osm..., at 33495 to 35587 15107

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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28,374 - 15104 mRNA_6736 0.89 -0.5
28,500 - -0.3
28,653 - -0.4
28,712 - -0.6
28,946 + -0.7
28,970 + -4.2
28,990 + 0.2
29,115 - 2.5
29,121 - 0.0
29,124 + -0.0
29,269 + 0.1
29,399 - 0.0
29,449 + -0.8
29,540 - -1.2
29,550 - 0.4
29,585 - -0.3
29,606 + 0.5
29,690 - 15105 mRNA_6737 0.10 0.5
29,699 + 15105 mRNA_6737 0.10 -0.2
29,746 + 15105 mRNA_6737 0.12 1.1
29,836 + 15105 mRNA_6737 0.14 -0.2
30,011 + 15105 mRNA_6737 0.19 0.6
30,136 + 15105 mRNA_6737 0.23 0.6
30,288 - 15105 mRNA_6737 0.27 0.8
30,417 + 15105 mRNA_6737 0.31 0.0
30,446 + 15105 mRNA_6737 0.31 0.1
30,845 - 15105 mRNA_6737 0.43 0.5
31,158 - 15105 mRNA_6737 0.51 -0.2
31,310 - 15105 mRNA_6737 0.56 -0.5
31,481 - 15105 mRNA_6737 0.60 0.2
31,607 - 15105 mRNA_6737 0.64 0.0
31,686 - 15105 mRNA_6737 0.66 -0.7
31,725 + 15105 mRNA_6737 0.67 -0.1
31,881 + 15105 mRNA_6737 0.72 -1.9
31,986 - 15105 mRNA_6737 0.75 -0.5
32,059 - 15105 mRNA_6737 0.77 -1.2
32,076 + 15105 mRNA_6737 0.77 0.1
32,236 + 15105 mRNA_6737 0.82 -0.3
32,282 + 15105 mRNA_6737 0.83 0.5
32,507 - 15105 mRNA_6737 0.89 0.5
32,608 + 0.8
32,639 + 0.9
32,639 + -1.2
32,642 - 0.3
32,642 - 0.1
32,677 - 0.4
32,687 + -0.4
32,687 + 0.0
32,737 - -0.3
32,738 + 0.3
32,777 + -0.1
32,839 - -0.4
33,105 - 15106 mRNA_6738 0.48 -0.4
33,228 - -0.4
33,402 + 0.9
33,536 - -0.1
33,559 - -0.7