Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6730

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6729: 15097 - HMMPfam-Putative GTPase activating protein for Arf-PF01412,PRINTS-HIV Rev interacting protein signature-PR00405,ProSiteProfiles-ARF GTPase-activating proteins domain profile.-PS50115,SMART-Putative GTP-ase activating proteins for the small GTPase, ARF-SM00105,SUPERFAMILY--SSF57863, at 8871 to 11490 15097 mRNA_6730: 15098 - K00326 E1.6.2.2 cytochrome-b5 reductase, at 12080 to 14125 15098

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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11,139 - 15097 mRNA_6729 0.87 0.7
11,157 + 15097 mRNA_6729 0.87 0.8
11,328 + 0.7
11,378 + -0.7
11,390 - -0.8
11,574 - 0.4
11,608 - 0.4
11,712 - 0.4
11,716 + 0.1
11,855 - -0.3
11,903 - -0.0
11,990 - 0.2
11,994 - -0.2
12,015 - 0.7
12,123 + -0.1
12,165 - -2.5
12,185 + 1.1
12,201 + 1.1
12,314 - 15098 mRNA_6730 0.11 0.2
12,315 + 15098 mRNA_6730 0.11 -0.1
12,327 - 15098 mRNA_6730 0.12 2.1
12,329 - 15098 mRNA_6730 0.12 0.7
12,332 + 15098 mRNA_6730 0.12 -1.1
12,633 + 15098 mRNA_6730 0.27 -0.0
12,666 - 15098 mRNA_6730 0.29 -0.3
12,742 - 15098 mRNA_6730 0.32 -0.6
13,030 - 15098 mRNA_6730 0.46 -0.9
13,145 + 15098 mRNA_6730 0.52 -1.0
13,356 + 15098 mRNA_6730 0.62 0.1
13,471 - 15098 mRNA_6730 0.68 0.0
13,568 + 15098 mRNA_6730 0.73 0.9
13,599 - 15098 mRNA_6730 0.74 -1.0
13,639 - 15098 mRNA_6730 0.76 -1.7
13,645 - 15098 mRNA_6730 0.76 0.9
13,649 - 15098 mRNA_6730 0.77 -0.2
13,730 + 15098 mRNA_6730 0.81 0.4
13,862 - 15098 mRNA_6730 0.87 -0.4
13,862 + 15098 mRNA_6730 0.87 -0.1
13,870 - 15098 mRNA_6730 0.87 -0.9
14,162 + 0.3
14,165 - -1.2
14,174 - 0.1
14,196 - 0.4
14,264 + 0.1
14,311 + -0.0
14,314 - 0.7
14,317 - 0.8
14,365 - -0.2
14,449 + -1.7
14,463 - -2.2
14,497 - 0.1
14,606 - 0.0
14,606 + 0.4
14,788 - 0.3
14,802 + 0.1
14,898 - 1.3
14,918 - -1.0
15,094 + -0.2
15,118 - 0.3