Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6550

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6549: 14917 - KOG0605 NDR and related serine/threonine kinases, at 1062959 to 1066157 14917 mRNA_6550: 14918 - K11374 ELP2 elongator complex protein 2, at 1066227 to 1069568 14918

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,065,277 - 14917 mRNA_6549 0.72 0.2
1,065,346 + 14917 mRNA_6549 0.75 -0.6
1,065,373 + 14917 mRNA_6549 0.75 -0.6
1,065,405 - 14917 mRNA_6549 0.76 -0.1
1,065,498 - 14917 mRNA_6549 0.79 0.1
1,065,529 + 14917 mRNA_6549 0.80 0.2
1,065,622 + 14917 mRNA_6549 0.83 1.3
1,065,672 + 14917 mRNA_6549 0.85 0.0
1,065,824 + 14917 mRNA_6549 0.90 -1.0
1,066,065 + -0.2
1,066,076 - 0.3
1,066,131 + -0.1
1,066,303 - -2.4
1,067,701 - 14918 mRNA_6550 0.44 -4.1
1,068,689 - 14918 mRNA_6550 0.74 -3.1
1,068,781 - 14918 mRNA_6550 0.76 -1.5
1,068,990 + 14918 mRNA_6550 0.83 -2.5
1,069,133 - 14918 mRNA_6550 0.87 -1.4
1,069,141 - 14918 mRNA_6550 0.87 -1.8
1,069,423 - -2.7
1,069,499 - -1.8
1,069,545 - 0.9
1,069,568 - 0.4
1,069,590 - -1.7
1,069,594 + 0.2
1,069,602 - -0.9
1,069,635 - -1.5
1,069,723 + 0.4
1,069,738 + -0.3
1,069,760 + -0.3
1,069,862 + 0.3
1,069,863 + -0.9
1,069,884 - 1.0
1,069,907 - 2.4
1,069,967 + -0.3
1,069,980 + 0.6
1,069,981 - 0.5
1,070,077 + 0.3
1,070,130 - -0.2
1,070,245 + -1.7
1,070,257 + -0.6
1,070,271 - -0.2
1,070,397 + -0.7