Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6487

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6486: 14854 - K08294 MKK1_2 mitogen-activated protein kinase kinase, at 900253 to 901810 14854 mRNA_6487: 14855 - K11237 BEM1 bud emergence protein 1, at 902586 to 904816 14855 mRNA_6488: 14856 - K01655 LYS21, LYS20 homocitrate synthase, at 905172 to 907549 14856

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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901,588 + 14854 mRNA_6486 0.86 0.5
901,936 - 1.6
901,961 - 0.9
901,962 + 0.1
901,963 - -0.4
901,967 + -0.8
901,986 + 0.0
901,989 + -0.3
901,997 - 0.7
902,020 + -0.7
902,095 - 1.8
902,104 + 1.2
902,129 - 0.2
902,134 + 1.0
902,143 - 0.3
902,157 + 0.7
902,161 + -0.1
902,178 - -0.0
902,252 - 1.1
902,279 - 0.6
902,291 + -0.2
902,298 - -0.5
902,308 + -0.0
902,364 - 1.3
902,364 + -0.6
902,415 + 0.4
902,428 - -0.7
902,572 - 2.4
902,579 - 0.4
902,594 - 1.1
902,643 + 1.2
902,884 + 14855 mRNA_6487 0.13 0.4
903,001 - 14855 mRNA_6487 0.19 0.1
903,062 + 14855 mRNA_6487 0.21 1.6
903,265 + 14855 mRNA_6487 0.30 0.2
903,743 + 14855 mRNA_6487 0.52 0.2
903,866 + 14855 mRNA_6487 0.57 -0.0
903,893 - 14855 mRNA_6487 0.59 1.0
903,981 - 14855 mRNA_6487 0.63 1.7
904,618 + 0.8
904,857 - 0.1
904,883 - -0.7
904,883 - 0.0
904,897 - 0.3
904,899 + 0.3
904,899 - 0.5
904,922 - -0.9
904,923 + -0.1
904,994 + -0.6
904,998 - 1.7
905,047 - 0.3
905,050 + 0.3
905,059 + -1.4
905,073 - -0.0
905,075 - -0.0
905,089 - -0.2
905,091 - -1.0
905,092 + 0.6
905,093 + -0.5
905,110 - 0.6
905,408 - 0.3
905,562 + 14856 mRNA_6488 0.16 0.3