Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6484

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6483: 14851 - Hypothetical Protein, at 894956 to 895414 14851 mRNA_6484: 14852 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 895404 to 896559 14852

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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894,431 - -0.3
894,460 - -0.0
894,465 + 0.1
894,480 + 0.4
894,514 + -0.6
894,561 - 0.8
894,596 + 0.4
894,755 + -2.2
894,768 - -0.8
894,788 + 0.2
894,802 + 1.5
895,140 - 14851 mRNA_6483 0.40 -0.6
895,283 - 14851 mRNA_6483 0.71 -0.4
895,321 + 14851 mRNA_6483 0.80 0.1
895,354 - 14851 mRNA_6483 0.87 -0.5
895,446 - -0.0
895,458 + -0.2
895,490 + -0.2
895,504 + 1.2
895,636 - 14852 mRNA_6484 0.20 -1.1
895,650 + 14852 mRNA_6484 0.21 0.4
895,651 + 14852 mRNA_6484 0.21 -0.9
895,652 + 14852 mRNA_6484 0.21 -0.3
896,183 + 14852 mRNA_6484 0.67 0.5
896,640 + 0.5
897,065 - 0.7
897,339 + 0.6
897,387 + -0.7