Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6375

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6374: 14742 - K20464 OSBPL5_8, ORP5_8 oxysterol-binding protein-related protein 5/8, at 663767 to 666324 14742 mRNA_6375: 14743 - K01178 E3.2.1.3 glucoamylase, at 666615 to 668807 14743 mRNA_6376: 14744 - K14811 DBP3 ATP-dependent RNA helicase DBP3, at 669168 to 671272 14744

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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665,763 + 14742 mRNA_6374 0.78 1.0
665,891 - 14742 mRNA_6374 0.83 0.8
665,899 - 14742 mRNA_6374 0.83 0.6
665,900 - 14742 mRNA_6374 0.83 0.5
665,910 + 14742 mRNA_6374 0.84 0.4
665,929 - 14742 mRNA_6374 0.85 0.7
665,939 + 14742 mRNA_6374 0.85 1.4
666,026 - 14742 mRNA_6374 0.88 1.2
666,042 + 14742 mRNA_6374 0.89 0.2
666,042 + 14742 mRNA_6374 0.89 1.0
666,045 - 14742 mRNA_6374 0.89 0.5
666,057 - 14742 mRNA_6374 0.90 0.5
666,068 + 14742 mRNA_6374 0.90 0.0
666,069 + 1.0
666,070 - 0.1
666,070 - 1.6
666,072 + -0.1
666,075 + 0.7
666,174 + -0.2
666,203 - 0.6
666,204 + 1.1
666,205 + 0.4
666,208 - 1.0
666,211 - -0.1
666,215 - 1.1
666,220 + 0.6
666,243 - 0.1
666,341 - -0.8
666,349 - -0.4
666,356 + 0.2
666,392 + -0.2
666,666 - -0.3
666,979 + 14743 mRNA_6375 0.17 0.1
667,258 - 14743 mRNA_6375 0.29 -0.1
667,264 - 14743 mRNA_6375 0.30 0.6
667,608 + 14743 mRNA_6375 0.45 -0.4
667,758 + 14743 mRNA_6375 0.52 -0.5
667,909 - 14743 mRNA_6375 0.59 0.3
668,192 + 14743 mRNA_6375 0.72 -0.2
668,198 - 14743 mRNA_6375 0.72 1.1
668,634 - 0.2
668,752 + -0.3
668,789 - -1.1
668,869 - 0.8
668,918 + 0.6
668,922 - 0.1
668,930 + -0.1
668,936 - 0.0
668,965 + -1.8
668,967 + -2.9
668,998 - -0.1
669,108 + -0.2
669,110 - 0.6
669,111 - 0.5
669,111 - 0.7
669,116 + -0.7
669,119 - 0.2
669,120 + 0.6
669,124 - -0.0
669,125 - 0.9
669,126 - 0.9
669,133 - -0.4
669,134 + 0.2
669,137 + 0.8
669,146 - -0.8
669,274 + -0.3
669,287 + 0.4
669,295 - -0.6
669,302 - -0.8
669,391 + 14744 mRNA_6376 0.11 0.5
669,564 - 14744 mRNA_6376 0.19 -2.0
669,710 - 14744 mRNA_6376 0.26 0.3