Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6307

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6306: 14674 - K05727 DOCK3 dedicator of cytokinesis protein 3, at 487533 to 494216 14674 mRNA_6307: 14675 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 494501 to 498811 14675 mRNA_6308: 14676 - K09326 OTX1 homeobox protein OTX1, at 499751 to 502382 14676

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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493,554 - -1.1
494,285 - -0.2
494,308 - -0.3
494,415 + 0.8
494,446 - 1.4
494,463 + 0.5
494,591 + 0.5
494,604 - -0.2
494,604 - -0.1
494,613 + 1.2
494,615 - -0.3
494,643 + -0.4
494,755 - 0.1
494,779 - -0.8
494,881 - 1.1
494,893 - 0.7
494,894 + -0.1
494,900 - -0.1
494,909 + -0.5
494,912 - -0.9
494,917 + -0.7
494,930 + 0.4
494,943 - 14675 mRNA_6307 0.10 0.3
495,071 - 14675 mRNA_6307 0.13 -0.9
495,208 - 14675 mRNA_6307 0.16 -0.1
495,913 + 14675 mRNA_6307 0.33 0.3
496,079 + 14675 mRNA_6307 0.37 1.1
496,225 + 14675 mRNA_6307 0.40 -0.5
496,380 + 14675 mRNA_6307 0.44 1.1
496,663 - 14675 mRNA_6307 0.50 0.3
497,408 - 14675 mRNA_6307 0.67 -1.4
497,569 + 14675 mRNA_6307 0.71 0.4
497,714 + 14675 mRNA_6307 0.75 -1.1
498,131 + 14675 mRNA_6307 0.84 -0.2
498,462 - 0.5
498,572 - 0.2
498,736 + -0.3
498,878 + 1.4
498,889 - 1.2
498,894 + 0.0
499,024 - 0.9
499,026 - -2.5
499,027 + -0.3
499,031 - 1.9
499,039 + 0.1
499,048 - 0.1
499,050 + -0.8
499,059 + 0.3
499,065 - -2.0
499,100 + 0.5
499,127 + -0.5
499,127 + 0.5
499,129 + 2.1
499,129 - -0.6
499,136 - 0.4
499,139 - -0.3
499,140 + 1.4
499,147 + 0.4
499,152 - -0.8
499,153 - -0.2
499,170 - 1.1
499,174 - 0.3
499,176 - 0.2
499,178 + 0.0
499,179 - -0.1
499,179 + 0.5
499,182 + -0.1
499,183 + -0.1
499,191 - -0.1
499,205 + -1.0
499,220 + -0.5
499,314 - 0.3
499,321 - 0.3
499,323 - 0.1
499,333 - 0.4
499,335 + 0.2
499,338 + -0.5
499,341 - 0.8
499,341 - -0.7
499,342 - -1.0
499,351 + -0.6
499,372 + -0.2
499,482 - -0.2
499,482 - 1.9
499,485 - 0.3
499,486 + 0.5
499,487 - 0.8
499,569 - -0.7
499,625 - 0.5
499,651 - -1.3
499,775 - -0.1