Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6306

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6306: 14674 - K05727 DOCK3 dedicator of cytokinesis protein 3, at 487533 to 494216 14674 mRNA_6307: 14675 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 494501 to 498811 14675

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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486,564 - 1.2
486,641 + -0.4
486,657 - 0.9
486,779 - -0.7
486,782 - -0.7
486,812 + -0.2
486,957 + 0.9
486,962 - -0.8
486,963 + 0.9
486,980 - 1.3
486,981 + 1.3
487,111 + -0.6
487,247 - 0.1
487,372 + -1.3
487,561 - 1.2
488,091 + -0.4
488,117 - 0.8
488,124 + 0.7
488,286 - 14674 mRNA_6306 0.11 -0.9
489,269 - 14674 mRNA_6306 0.26 0.4
489,281 - 14674 mRNA_6306 0.26 -0.5
489,605 - 14674 mRNA_6306 0.31 -0.1
489,721 + 14674 mRNA_6306 0.33 -1.3
489,731 + 14674 mRNA_6306 0.33 -0.2
490,438 - 14674 mRNA_6306 0.43 0.0
490,459 + 14674 mRNA_6306 0.44 0.2
490,903 - 14674 mRNA_6306 0.50 0.0
491,341 + 14674 mRNA_6306 0.57 0.9
491,727 + 14674 mRNA_6306 0.63 0.6
491,730 - 14674 mRNA_6306 0.63 1.0
491,788 + 14674 mRNA_6306 0.64 1.0
492,952 - 14674 mRNA_6306 0.81 0.4
493,022 + 14674 mRNA_6306 0.82 -0.1
493,236 + 14674 mRNA_6306 0.85 0.7
493,554 - -1.1
494,285 - -0.2
494,308 - -0.3
494,415 + 0.8
494,446 - 1.4
494,463 + 0.5
494,591 + 0.5
494,604 - -0.2
494,604 - -0.1
494,613 + 1.2
494,615 - -0.3
494,643 + -0.4
494,755 - 0.1
494,779 - -0.8
494,881 - 1.1
494,893 - 0.7
494,894 + -0.1
494,900 - -0.1
494,909 + -0.5
494,912 - -0.9
494,917 + -0.7
494,930 + 0.4
494,943 - 14675 mRNA_6307 0.10 0.3
495,071 - 14675 mRNA_6307 0.13 -0.9
495,208 - 14675 mRNA_6307 0.16 -0.1