Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6242

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6241: 14609 - Hypothetical Protein, at 333735 to 334704 14609 mRNA_6242: 14610 - K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase, at 335352 to 337546 14610 mRNA_6243: 14611 - Hypothetical Protein, at 337932 to 340072 14611

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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334,402 + 14609 mRNA_6241 0.69 0.0
334,534 - 14609 mRNA_6241 0.82 -0.1
334,682 + 2.4
334,682 - 1.0
334,705 + 1.5
334,938 + 0.2
335,105 - 0.2
335,214 + -0.6
335,268 - -0.0
335,289 - 0.5
335,292 + -0.4
335,384 + -0.3
335,432 - 1.0
335,433 + 0.0
335,494 + -0.6
335,574 - 14610 mRNA_6242 0.10 0.2
335,597 + 14610 mRNA_6242 0.11 0.4
335,741 + 14610 mRNA_6242 0.18 -0.7
335,753 + 14610 mRNA_6242 0.18 0.2
336,063 - 14610 mRNA_6242 0.32 -1.0
336,189 + 14610 mRNA_6242 0.38 1.1
336,663 + 14610 mRNA_6242 0.60 -0.1
336,764 - 14610 mRNA_6242 0.64 0.5
336,776 + 14610 mRNA_6242 0.65 -0.5
337,073 + 14610 mRNA_6242 0.78 -1.1
337,340 + -1.7
337,646 + 0.3
337,784 - -0.3
338,228 + 14611 mRNA_6243 0.14 1.4
338,399 + 14611 mRNA_6243 0.22 -0.7