Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6106

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6106: 14474 - K08332 VAC8 vacuolar protein 8, at 223 to 3658 14474 mRNA_6107: 14475 - K14401 CPSF1, CFT1 cleavage and polyadenylation specificity factor subunit 1, at 3990 to 10005 14475

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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39 + 0.1
39 + 2.0
40 + -1.2
40 + -0.4
40 + 0.6
41 + 0.1
56 + 0.8
56 + 1.0
56 + 0.0
58 + -0.5
59 + -1.2
59 + -1.0
62 - 0.9
65 - 0.1
77 + -1.4
84 + 1.6
102 + 0.2
137 + -3.1
151 + 0.0
200 + -0.5
208 + 0.5
216 + -0.5
229 + 0.1
348 - -0.7
430 + 0.5
498 - -0.1
502 - 1.2
685 + 14474 mRNA_6106 0.13 -0.7
747 + 14474 mRNA_6106 0.15 0.4
755 + 14474 mRNA_6106 0.15 0.8
946 + 14474 mRNA_6106 0.21 0.1
975 + 14474 mRNA_6106 0.22 -1.6
1,245 + 14474 mRNA_6106 0.30 0.4
2,125 + 14474 mRNA_6106 0.55 0.7
2,839 - 14474 mRNA_6106 0.76 0.3
3,125 - 14474 mRNA_6106 0.84 1.1
3,248 - 14474 mRNA_6106 0.88 0.4
3,570 + -0.7
3,665 + 0.2
3,692 + 1.4
3,706 + -1.9
3,726 + -0.2
3,820 + 1.5
3,853 + 0.4
3,859 + 1.0
3,909 - -0.9
3,929 - -1.1