Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5939

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5938: 14306 - Hypothetical Protein, at 1278732 to 1279189 14306 mRNA_5939: 14307 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 1279291 to 1281884 14307 mRNA_5940: 14308 - KOG3975 Uncharacterized conserved protein, at 1282291 to 1283820 14308

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,278,430 - 0.4
1,278,434 - -0.1
1,278,487 + 0.4
1,278,537 - -0.3
1,278,553 + 1.3
1,278,554 + 0.4
1,278,612 + -1.7
1,278,665 + -0.8
1,278,692 - 0.2
1,278,718 + -0.5
1,278,724 + 1.0
1,278,829 - 14306 mRNA_5938 0.21 0.4
1,278,842 + 14306 mRNA_5938 0.24 -0.4
1,278,906 + 14306 mRNA_5938 0.38 -1.0
1,278,906 - 14306 mRNA_5938 0.38 -0.0
1,279,002 + 14306 mRNA_5938 0.59 -0.3
1,279,161 + -1.0
1,279,321 + 0.3
1,279,503 + 0.4
1,279,695 + 14307 mRNA_5939 0.16 0.4
1,280,021 + 14307 mRNA_5939 0.28 -1.0
1,280,311 - 14307 mRNA_5939 0.39 1.4
1,280,613 - 14307 mRNA_5939 0.51 -0.1
1,280,922 - 14307 mRNA_5939 0.63 0.9
1,281,063 + 14307 mRNA_5939 0.68 -0.2
1,281,180 + 14307 mRNA_5939 0.73 -0.2
1,281,205 - 14307 mRNA_5939 0.74 0.3
1,281,307 - 14307 mRNA_5939 0.78 0.8
1,281,338 - 14307 mRNA_5939 0.79 0.7
1,281,362 + 14307 mRNA_5939 0.80 -0.2
1,281,602 - 14307 mRNA_5939 0.89 -0.1
1,281,604 - 14307 mRNA_5939 0.89 -1.2
1,281,635 - -0.1
1,281,741 - -0.9
1,281,750 + -0.2
1,281,754 - 0.2
1,281,756 - 1.0
1,281,769 - 0.2
1,281,775 + -0.4
1,281,792 + -0.3
1,281,906 + -0.1
1,281,918 - 0.0
1,281,923 - -0.0
1,281,932 - -0.1
1,281,936 - 0.1
1,281,937 - 0.3
1,281,938 + -0.9
1,281,945 - 0.1
1,281,948 + -0.0
1,281,950 + 1.7
1,281,954 + 0.4
1,281,955 - 0.5
1,281,979 + -0.6
1,281,988 - 0.5
1,281,992 + -0.1
1,281,997 + 0.4
1,282,028 - 0.3
1,282,031 - 0.1
1,282,033 - 0.8
1,282,045 + -1.4
1,282,065 + 0.0
1,282,066 - 0.2
1,282,071 + 0.8
1,282,078 + 0.4
1,282,084 - -0.8
1,282,086 - -1.0
1,282,086 + 1.3
1,282,095 - 0.9
1,282,097 - -0.0
1,282,098 + 0.0
1,282,112 + -0.3
1,282,119 - 0.5
1,282,160 + -0.4
1,282,224 - 0.1
1,282,237 - -0.3
1,282,246 + -0.4
1,282,247 - 1.7
1,282,377 + 0.9
1,282,517 - 14308 mRNA_5940 0.15 -0.7
1,282,671 - 14308 mRNA_5940 0.25 -0.1
1,282,673 - 14308 mRNA_5940 0.25 0.3
1,282,675 - 14308 mRNA_5940 0.25 1.5
1,282,699 + 14308 mRNA_5940 0.27 0.6
1,282,809 - 14308 mRNA_5940 0.34 0.8