Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5894

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5893: 14261 - KOG1748 Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit, at 1185881 to 1186514 14261 mRNA_5894: 14262 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 1186921 to 1189596 14262 mRNA_5895: 14263 - K17255 GDI1_2 Rab GDP dissociation inhibitor, at 1189852 to 1191772 14263

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,186,803 - -0.1
1,186,866 + 0.7
1,186,868 + 0.7
1,187,000 + -0.3
1,187,001 - -0.3
1,187,030 + 1.6
1,187,030 + 0.2
1,187,077 - -0.9
1,187,153 - -1.4
1,187,179 + 0.1
1,187,275 - 14262 mRNA_5894 0.13 0.9
1,187,422 + 14262 mRNA_5894 0.19 1.1
1,187,581 + 14262 mRNA_5894 0.25 -0.3
1,188,078 + 14262 mRNA_5894 0.43 -1.0
1,188,186 - 14262 mRNA_5894 0.47 -0.1
1,188,218 + 14262 mRNA_5894 0.48 -0.2
1,188,542 + 14262 mRNA_5894 0.61 -0.6
1,188,761 + 14262 mRNA_5894 0.69 0.6
1,188,788 - 14262 mRNA_5894 0.70 -0.2
1,188,919 - 14262 mRNA_5894 0.75 -0.6
1,189,387 + 1.0
1,189,831 - 0.2