Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5778

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5777: 14145 - Hypothetical Protein, at 921951 to 922623 14145 mRNA_5778: 14146 - HMMPfam-bZIP transcription factor-PF00170,HMMPfam-Transcription factor PAP1-PF08601,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF111430,SUPERFAMILY--SSF57959, at 923190 to 924639 14146 mRNA_5779: 14147 - K14848 RRB1, GRWD1 ribosome assembly protein RRB1, at 925113 to 926759 14147

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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922,192 - 14145 mRNA_5777 0.36 -0.5
922,364 + 14145 mRNA_5777 0.61 -0.5
922,366 + 14145 mRNA_5777 0.62 0.5
922,378 - 14145 mRNA_5777 0.63 -0.4
922,487 + 14145 mRNA_5777 0.80 -0.6
922,770 - 0.2
922,786 - -0.3
922,787 - -0.0
922,793 + -0.0
922,794 - -0.1
922,802 + 0.7
922,811 + -0.9
922,822 + -0.8
922,985 + -0.0
923,012 + -1.1
923,126 - 0.3
923,139 + -0.0
923,139 + 0.7
923,431 + 14146 mRNA_5778 0.17 0.2
923,702 - 14146 mRNA_5778 0.35 -0.4
923,858 + 14146 mRNA_5778 0.46 -0.0
924,561 + 1.6
924,561 + -1.0
924,571 - -1.0
924,571 - -0.1
924,572 + 0.9
924,694 + -0.3
925,084 + 1.0