Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5757

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5756: 14124 - HMMPfam-Myb-like DNA-binding domain-PF00249,ProSiteProfiles-Myb-like domain profile.-PS50090,ProSiteProfiles-Myb-type HTH DNA-binding domain profile.-PS51294,SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717,SUPERFAMILY--SSF46689, at 870782 to 872057 14124 mRNA_5757: 14125 - HMMPfam-Glycosyl hydrolase catalytic core-PF11790,SUPERFAMILY--SSF51445, at 872220 to 874136 14125 mRNA_5758: 14126 - K00627 DLAT, aceF, pdhC pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase), at 874421 to 875943 14126

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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871,486 - 14124 mRNA_5756 0.55 -1.2
871,612 + 14124 mRNA_5756 0.65 0.2
871,774 - 14124 mRNA_5756 0.78 0.4
871,908 - 14124 mRNA_5756 0.88 -0.5
872,034 - 0.1
872,074 + 0.2
872,718 - 14125 mRNA_5757 0.26 -1.0
872,720 - 14125 mRNA_5757 0.26 -0.0
872,778 - 14125 mRNA_5757 0.29 -1.4
872,789 + 14125 mRNA_5757 0.30 0.2
872,905 + 14125 mRNA_5757 0.36 2.5
873,196 - 14125 mRNA_5757 0.51 0.5
873,245 + 14125 mRNA_5757 0.53 -0.1
873,349 - 14125 mRNA_5757 0.59 -0.5
873,516 + 14125 mRNA_5757 0.68 1.3
873,646 + 14125 mRNA_5757 0.74 -0.4
873,683 + 14125 mRNA_5757 0.76 0.1
873,811 + 14125 mRNA_5757 0.83 2.8
874,102 - 0.2
874,215 - -0.2