Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5720

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5719: 14087 - K00290 LYS1 saccharopine dehydrogenase (NAD+, L-lysine forming), at 765726 to 767088 14087 mRNA_5720: 14088 - K04392 RAC1 Ras-related C3 botulinum toxin substrate 1, at 767473 to 768381 14088 mRNA_5721: 14089 - K19219 JMJD7 jumonji domain-containing protein 7, at 768732 to 770042 14089

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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767,145 - -2.0
767,293 - 0.2
767,300 + -0.2
767,306 + 0.2
767,440 + 0.8
767,443 - -0.7
767,443 - -0.3
767,477 + 0.5
767,480 + -1.1
767,591 - 14088 mRNA_5720 0.13 0.6
767,596 + 14088 mRNA_5720 0.14 2.0
767,600 + 14088 mRNA_5720 0.14 1.1
767,602 + 14088 mRNA_5720 0.14 1.0
767,605 - 14088 mRNA_5720 0.15 2.5
767,635 + 14088 mRNA_5720 0.18 0.6
768,751 - 0.5
769,199 - 14089 mRNA_5721 0.36 0.4
769,237 + 14089 mRNA_5721 0.39 0.4