Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5638

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5637: 14005 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 566875 to 570624 14005 mRNA_5638: 14006 - Hypothetical Protein, at 570923 to 572239 14006 mRNA_5639: 14007 - SUPERFAMILY--SSF52047, at 572457 to 573872 14007

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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570,039 + 14005 mRNA_5637 0.84 -0.5
570,048 + 14005 mRNA_5637 0.85 -0.2
570,145 - 14005 mRNA_5637 0.87 0.8
570,180 - 14005 mRNA_5637 0.88 -1.4
570,329 - -1.0
570,451 + -0.9
570,458 + -0.9
570,461 - 0.7
570,469 + 0.7
570,473 + -0.6
570,589 + 0.9
570,769 + -0.2
570,784 + -0.4
570,784 - -0.0
570,788 - -1.1
571,219 - 14006 mRNA_5638 0.22 0.1
571,392 + 14006 mRNA_5638 0.36 -0.7
571,537 - 14006 mRNA_5638 0.47 -0.3
571,544 + 14006 mRNA_5638 0.47 -0.7
571,549 + 14006 mRNA_5638 0.48 0.8
572,106 - 14006 mRNA_5638 0.90 -1.6
572,267 + 0.7
572,396 - 0.1
572,567 - -0.5
572,701 - 14007 mRNA_5639 0.17 -0.3
572,730 + 14007 mRNA_5639 0.19 -0.4
572,942 - 14007 mRNA_5639 0.34 0.3
573,142 + 14007 mRNA_5639 0.48 -0.0