Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5581

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5580: 13948 - K00162 PDHB, pdhB pyruvate dehydrogenase E1 component beta subunit, at 424310 to 425729 13948 mRNA_5581: 13949 - KOG1198 Zinc-binding oxidoreductase, at 426490 to 430753 13949 mRNA_5582: 13950 - KOG0254 Predicted transporter (major facilitator superfamily), at 431120 to 432974 13950

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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425,746 + 2.2
425,965 + -1.5
425,976 + 0.7
425,989 + -0.5
426,023 - 1.4
426,063 + 0.9
426,089 + -0.7
426,092 - -0.7
426,101 + -0.3
426,108 - 1.3
426,117 - -0.5
426,117 - -1.8
426,117 + -0.6
426,120 - -2.3
426,126 - -0.1
426,129 - 0.3
426,133 + 0.2
426,141 - 1.5
426,142 - 0.1
426,146 + -0.3
426,147 - 0.7
426,150 + -0.7
426,150 - -1.0
426,156 + -1.3
426,157 - 2.3
426,161 - 0.1
426,163 + 1.9
426,166 + -1.1
426,171 - -0.2
426,177 + -0.2
426,200 + -0.6
426,305 - -0.6
426,313 - -0.3
426,331 + 0.2
426,352 + 0.2
426,465 - 0.3
426,491 + 0.1
426,494 - 0.1
426,619 + 0.3
426,646 - -0.6
426,893 + -0.3
427,045 - 13949 mRNA_5581 0.13 -0.3
427,202 + 13949 mRNA_5581 0.17 1.0
427,507 + 13949 mRNA_5581 0.24 -0.7
427,859 + 13949 mRNA_5581 0.32 -0.3
428,081 + 13949 mRNA_5581 0.37 -1.9
428,846 - 13949 mRNA_5581 0.55 -0.9
428,853 + 13949 mRNA_5581 0.55 -1.1
428,926 - 13949 mRNA_5581 0.57 0.5
429,055 - 13949 mRNA_5581 0.60 -0.1
430,334 - -1.0
430,820 + -0.0
430,983 - -0.8
431,582 - 13950 mRNA_5582 0.25 0.4