Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5557

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5556: 13924 - KOG4580 Component of vacuolar transporter chaperone (Vtc) involved in vacuole fusion, at 374231 to 375171 13924 mRNA_5557: 13925 - K09008 NDUFAF3 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3, at 375495 to 376430 13925 mRNA_5558: 13926 - KOG3328 HGG motif-containing thioesterase, at 376866 to 377685 13926

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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375,110 - 0.3
375,255 - 1.4
375,274 - -0.3
375,280 - 0.0
375,283 - 0.6
375,289 + -0.0
375,290 - 0.2
375,448 - 0.4
375,553 - -0.3
375,586 - -0.5
375,695 - 13925 mRNA_5557 0.21 -1.8
375,718 + 13925 mRNA_5557 0.24 -1.0
375,894 + 13925 mRNA_5557 0.43 -1.1
376,039 + 13925 mRNA_5557 0.58 0.6
376,176 - 13925 mRNA_5557 0.73 -1.3
376,182 - 13925 mRNA_5557 0.73 1.7
376,191 + 13925 mRNA_5557 0.74 -0.1
376,192 + 13925 mRNA_5557 0.74 -1.0
376,192 + 13925 mRNA_5557 0.74 0.1
376,201 + 13925 mRNA_5557 0.75 -0.8
376,329 - 13925 mRNA_5557 0.89 -0.5
376,496 + 1.3
376,500 - -0.3
376,613 - -0.5
376,737 + -1.0
376,750 - 1.9
376,751 + -0.9
376,754 - -0.6
376,771 + -0.0
376,771 + -1.0
376,772 + 0.1
376,776 - -0.0
376,912 - -0.1
376,928 + 0.1
376,963 - 13926 mRNA_5558 0.12 0.2
377,207 - 13926 mRNA_5558 0.42 0.6
377,212 + 13926 mRNA_5558 0.42 0.1
377,422 + 13926 mRNA_5558 0.68 -1.5