Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5540

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5539: 13907 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 328856 to 330220 13907 mRNA_5540: 13908 - Interpro GDP-fucose protein O-fucosyltransferase, at 330944 to 333027 13908 mRNA_5541: 13909 - K02482 K02482 two-component system, NtrC family, sensor kinase, at 333432 to 336799 13909

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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329,996 + 13907 mRNA_5539 0.84 -0.3
330,435 + -0.0
330,445 - 1.3
330,574 - -0.5
330,579 - -1.2
330,580 + -0.1
330,589 - 0.9
330,728 + 0.2
330,737 - 0.5
330,753 + -0.1
330,753 + -0.0
330,761 + -0.2
330,861 - 2.7
330,870 - 1.2
330,897 - 0.8
331,024 - 0.6
331,520 + 13908 mRNA_5540 0.28 0.5
331,614 - 13908 mRNA_5540 0.32 0.6
331,657 - 13908 mRNA_5540 0.34 0.5
331,785 + 13908 mRNA_5540 0.40 0.1
331,966 + 13908 mRNA_5540 0.49 0.9
331,971 - 13908 mRNA_5540 0.49 0.1
331,980 + 13908 mRNA_5540 0.50 0.8
332,123 + 13908 mRNA_5540 0.57 2.5
332,275 + 13908 mRNA_5540 0.64 0.5
332,285 - 13908 mRNA_5540 0.64 1.7
332,379 - 13908 mRNA_5540 0.69 0.4
332,811 + 13908 mRNA_5540 0.90 1.1
332,923 + 0.3
332,978 + -0.9
333,094 - 0.4
333,219 + 0.4
333,222 + 1.0
333,255 + 0.2
333,261 - -0.0
333,261 - 0.5
333,271 - -0.5
333,279 + 0.3
333,335 + -0.7
333,339 - 0.3
333,343 - -0.5
333,352 - -0.3
333,355 - -0.0
333,356 + -0.5
333,361 + 0.2
333,361 - -0.6
333,362 + 0.8
333,372 + 0.1
333,379 - -0.3
333,383 + 0.6
333,405 - -0.9
333,407 + -0.4
333,443 - -0.3
333,485 - 0.1
333,542 + 0.6
333,575 - 0.6
333,580 - -0.1
333,683 - 0.3
333,699 + 0.0
333,853 - 13909 mRNA_5541 0.12 -1.1