Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5520

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5519: 13887 - HMMPfam-TRAF-type zinc finger-PF02176,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145, at 288669 to 289832 13887 mRNA_5520: 13888 - KOG0297 TNF receptor-associated factor, at 290297 to 291417 13888 mRNA_5521: 13889 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 291900 to 293030 13889

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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289,539 - 13887 mRNA_5519 0.75 1.3
289,801 - -0.2
289,816 - 0.1
289,953 - 0.3
290,007 - 0.2
290,092 - -0.1
290,102 + 2.8
290,103 - -0.9
290,275 - -1.8
290,661 - 13888 mRNA_5520 0.32 -0.2
290,661 - 13888 mRNA_5520 0.32 -1.4
290,667 + 13888 mRNA_5520 0.33 1.0
290,673 - 13888 mRNA_5520 0.34 -0.7
290,687 + 13888 mRNA_5520 0.35 -0.4
290,687 - 13888 mRNA_5520 0.35 -1.5
290,713 + 13888 mRNA_5520 0.37 0.9
290,744 + 13888 mRNA_5520 0.40 0.3
290,799 - 13888 mRNA_5520 0.45 -0.4
290,859 - 13888 mRNA_5520 0.50 -1.9
291,103 - 13888 mRNA_5520 0.72 0.7
291,105 + 13888 mRNA_5520 0.72 0.4
291,151 - 13888 mRNA_5520 0.76 0.8
291,153 - 13888 mRNA_5520 0.76 -1.3
291,392 - -0.2
291,473 + -0.3
291,540 + 0.5
291,568 + -0.0
291,675 - -0.2
291,856 - -1.2
291,857 + 0.8
291,862 + -0.0
291,891 - -0.3
292,011 - -1.0
292,012 + 0.2
292,015 - 13889 mRNA_5521 0.10 0.1
292,019 + 13889 mRNA_5521 0.11 0.3
292,021 + 13889 mRNA_5521 0.11 -0.5
292,021 + 13889 mRNA_5521 0.11 -0.2
292,173 - 13889 mRNA_5521 0.24 -0.6
292,173 - 13889 mRNA_5521 0.24 -0.2
292,188 - 13889 mRNA_5521 0.25 0.1
292,192 + 13889 mRNA_5521 0.26 -0.5
292,324 - 13889 mRNA_5521 0.37 -0.4