Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5394

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5394: 13762 - SUPERFAMILY--SSF54897, at 121 to 1074 13762 mRNA_5395: 13763 - KOG4551 GPI-GlcNAc transferase complex, PIG-H component, involved in glycosylphosphatidylinositol anchor biosynthesis, at 1148 to 1997 13763

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1 + 0.8
1 + -0.2
1 + 1.0
1 + 0.1
23 + 0.0
29 + -1.0
29 + -1.1
34 + -0.4
39 + 0.2
39 + -0.1
47 + 0.3
50 + 0.3
50 + -1.1
50 + -0.1
50 + -0.2
50 - -0.5
51 + 0.9
61 + 0.4
62 + -0.7
96 + 0.2
116 + -1.0
158 - 0.2
159 - -0.3
160 - -0.6
169 - 1.1
180 - -1.4
189 + -0.5
198 + 0.4
201 - -0.3
208 - 0.5
210 + 0.4
225 + 13762 mRNA_5394 0.11 -0.7
225 + 13762 mRNA_5394 0.11 0.6
244 + 13762 mRNA_5394 0.13 0.3
245 - 13762 mRNA_5394 0.13 0.2
271 - 13762 mRNA_5394 0.16 0.3
276 - 13762 mRNA_5394 0.16 -1.7
277 + 13762 mRNA_5394 0.16 2.1
280 - 13762 mRNA_5394 0.17 -0.7
306 + 13762 mRNA_5394 0.19 0.0
317 - 13762 mRNA_5394 0.21 -1.6
345 + 13762 mRNA_5394 0.23 0.1
345 - 13762 mRNA_5394 0.23 -0.4
347 + 13762 mRNA_5394 0.24 0.1
359 - 13762 mRNA_5394 0.25 -0.9
387 - 13762 mRNA_5394 0.28 0.4
399 + 13762 mRNA_5394 0.29 -0.3
434 + 13762 mRNA_5394 0.33 0.4
447 - 13762 mRNA_5394 0.34 -0.4
485 - 13762 mRNA_5394 0.38 0.5
543 + 13762 mRNA_5394 0.44 0.8
649 + 13762 mRNA_5394 0.55 -2.5
667 + 13762 mRNA_5394 0.57 -0.8
667 - 13762 mRNA_5394 0.57 0.4
678 - 13762 mRNA_5394 0.58 1.9
718 + 13762 mRNA_5394 0.63 -1.3
723 + 13762 mRNA_5394 0.63 -1.2
802 + 13762 mRNA_5394 0.71 0.8
806 + 13762 mRNA_5394 0.72 0.0
905 - 13762 mRNA_5394 0.82 -0.2
911 + 13762 mRNA_5394 0.83 -0.4
965 + 13762 mRNA_5394 0.88 -0.3
966 + 13762 mRNA_5394 0.89 0.2
968 + 13762 mRNA_5394 0.89 0.6
1,014 - -0.9
1,084 - -0.0
1,103 - -0.0
1,110 + -0.6
1,245 - 13763 mRNA_5395 0.11 0.5
1,260 - 13763 mRNA_5395 0.13 0.6
1,376 - 13763 mRNA_5395 0.27 -0.2
1,438 + 13763 mRNA_5395 0.34 0.2
1,438 + 13763 mRNA_5395 0.34 1.3
1,438 + 13763 mRNA_5395 0.34 -0.0
1,523 + 13763 mRNA_5395 0.44 0.1
1,528 - 13763 mRNA_5395 0.45 -0.2
1,533 + 13763 mRNA_5395 0.45 -0.5
1,538 + 13763 mRNA_5395 0.46 1.1
1,538 - 13763 mRNA_5395 0.46 0.9
1,556 + 13763 mRNA_5395 0.48 1.6
1,639 + 13763 mRNA_5395 0.58 -0.6
1,854 - 13763 mRNA_5395 0.83 0.7
1,855 - 13763 mRNA_5395 0.83 0.0
1,887 - 13763 mRNA_5395 0.87 -0.9
1,908 - 13763 mRNA_5395 0.89 -0.1
2,000 - 1.5
2,009 + -0.5