Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5341

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5340: 13708 - K01092 E3.1.3.25, IMPA, suhB myo-inositol-1(or 4)-monophosphatase, at 493002 to 494592 13708 mRNA_5341: 13709 - KOG0692 Pentafunctional AROM protein, at 495239 to 496655 13709 mRNA_5342: 13710 - KOG0692 Pentafunctional AROM protein, at 496893 to 498783 13710

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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494,353 - 13708 mRNA_5340 0.85 0.3
494,496 - 0.6
494,503 + -0.3
494,506 - -0.2
494,666 - 0.5
494,693 - -0.7
494,698 + 0.2
494,787 + 0.7
494,790 + -0.1
494,799 + -0.0
494,805 - -0.1
494,818 + 0.4
494,820 - -1.0
494,820 - -0.9
494,843 + -0.1
494,893 + 0.2
494,933 - -0.4
494,967 + -0.2
494,981 - -0.6
495,105 - -0.4
495,290 + 1.3
495,377 - -0.0
495,448 - 13709 mRNA_5341 0.15 -0.7
495,464 + 13709 mRNA_5341 0.16 -0.4
495,698 - 13709 mRNA_5341 0.32 0.1
495,873 + 13709 mRNA_5341 0.45 0.3
495,997 + 13709 mRNA_5341 0.53 0.5
496,005 - 13709 mRNA_5341 0.54 -1.1
496,275 - 13709 mRNA_5341 0.73 -0.3
496,391 + 13709 mRNA_5341 0.81 0.4
496,427 - 13709 mRNA_5341 0.84 -0.2
496,564 + 0.4
496,567 - 0.1
496,572 - 0.1
496,584 + 0.4
496,853 - 0.4
496,874 - 0.2
496,875 - -0.1
496,877 + -0.3
496,884 - -0.6
496,895 + -0.3
496,990 - -0.9
497,019 + 1.7
497,038 + 0.4
497,160 + 13710 mRNA_5342 0.14 0.8
497,195 - 13710 mRNA_5342 0.16 -0.6
497,309 - 13710 mRNA_5342 0.22 -1.6
497,456 - 13710 mRNA_5342 0.30 0.1
497,601 - 13710 mRNA_5342 0.37 -0.3
497,635 - 13710 mRNA_5342 0.39 0.2
497,646 - 13710 mRNA_5342 0.40 -1.1