Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5340

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5339: 13707 - KOG4771 Nucleolar protein (NOP16) involved in 60S ribosomal subunit biogenesis, at 491578 to 492823 13707 mRNA_5340: 13708 - K01092 E3.1.3.25, IMPA, suhB myo-inositol-1(or 4)-monophosphatase, at 493002 to 494592 13708 mRNA_5341: 13709 - KOG0692 Pentafunctional AROM protein, at 495239 to 496655 13709

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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492,907 + 0.2
492,917 - -1.0
492,949 + 1.5
493,042 - 0.1
493,193 - 13708 mRNA_5340 0.12 0.2
493,198 + 13708 mRNA_5340 0.12 -1.3
493,208 + 13708 mRNA_5340 0.13 0.1
493,317 - 13708 mRNA_5340 0.20 -0.3
493,505 - 13708 mRNA_5340 0.32 -0.8
493,601 - 13708 mRNA_5340 0.38 0.2
493,739 - 13708 mRNA_5340 0.46 0.2
493,918 + 13708 mRNA_5340 0.58 0.7
493,919 - 13708 mRNA_5340 0.58 -0.1
494,047 + 13708 mRNA_5340 0.66 0.5
494,353 - 13708 mRNA_5340 0.85 0.3
494,496 - 0.6
494,503 + -0.3
494,506 - -0.2
494,666 - 0.5
494,693 - -0.7
494,698 + 0.2
494,787 + 0.7
494,790 + -0.1
494,799 + -0.0
494,805 - -0.1
494,818 + 0.4
494,820 - -1.0
494,820 - -0.9
494,843 + -0.1
494,893 + 0.2
494,933 - -0.4
494,967 + -0.2
494,981 - -0.6
495,105 - -0.4
495,290 + 1.3
495,377 - -0.0
495,448 - 13709 mRNA_5341 0.15 -0.7
495,464 + 13709 mRNA_5341 0.16 -0.4