Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5316

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5315: 13683 - K06158 ABCF3 ATP-binding cassette, subfamily F, member 3, at 436318 to 439528 13683 mRNA_5316: 13684 - Hypothetical Protein, at 440018 to 441628 13684 mRNA_5317: 13685 - K17498 SPN1, IWS1 transcription factor SPN1, at 441871 to 444778 13685

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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439,151 - 13683 mRNA_5315 0.88 -0.7
439,159 - 13683 mRNA_5315 0.88 0.3
439,316 - 0.1
439,323 + 0.1
439,349 + 1.7
439,474 - 0.1
439,580 + 0.8
439,582 - -0.4
439,639 - 0.1
439,652 - -1.3
439,771 - -0.4
439,789 + 0.5
439,789 + -0.3
439,921 - -0.4
439,926 - 0.3
439,929 + 0.0
439,935 + 0.1
439,970 + -1.4
440,178 + -0.7
440,210 + 13684 mRNA_5316 0.12 -1.2
440,229 + 13684 mRNA_5316 0.13 0.8
440,246 + 13684 mRNA_5316 0.14 -0.5
440,260 - 13684 mRNA_5316 0.15 0.2
440,525 - 13684 mRNA_5316 0.31 -0.5
440,536 - 13684 mRNA_5316 0.32 -0.2
440,547 + 13684 mRNA_5316 0.33 1.0
440,559 + 13684 mRNA_5316 0.34 0.4
440,655 + 13684 mRNA_5316 0.40 0.1
440,666 + 13684 mRNA_5316 0.40 0.4
440,719 + 13684 mRNA_5316 0.44 -0.3
441,095 - 13684 mRNA_5316 0.67 0.0
441,107 + 13684 mRNA_5316 0.68 1.4
441,203 - 13684 mRNA_5316 0.74 -1.3
441,234 - 13684 mRNA_5316 0.75 -0.3
441,321 - 13684 mRNA_5316 0.81 0.0
441,429 + 13684 mRNA_5316 0.88 0.1
441,548 - 0.3
441,551 + -1.2
441,554 - -2.1
441,750 + -0.8
441,967 + 0.7
442,128 + 0.5
442,146 + -0.8
442,289 - 13685 mRNA_5317 0.14 -0.7
442,296 - 13685 mRNA_5317 0.15 -0.4
442,578 - 13685 mRNA_5317 0.24 -2.0
442,618 + 13685 mRNA_5317 0.26 1.1