Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5280

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5279: 13647 - KOG2231 Predicted E3 ubiquitin ligase, at 344945 to 347664 13647 mRNA_5280: 13648 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 348551 to 349893 13648 mRNA_5281: 13649 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 350665 to 352490 13649

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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347,729 - 1.1
347,796 + -0.9
347,882 + 0.8
347,904 + 0.6
348,210 - 0.9
348,212 - -0.3
348,312 - 0.7
348,347 + -1.1
348,360 + -1.4
348,384 - -0.1
348,762 + 13648 mRNA_5280 0.16 -1.8
348,798 - 13648 mRNA_5280 0.18 -0.2
349,032 - 13648 mRNA_5280 0.36 -0.1
349,050 + 13648 mRNA_5280 0.37 0.8
349,356 + 13648 mRNA_5280 0.60 0.0
349,657 + 13648 mRNA_5280 0.82 0.3
349,764 + 0.0
349,799 - -0.4
349,802 - -0.1
349,802 + -0.6
349,864 + -0.2
350,002 + -1.7
350,007 + -0.0
350,079 - 0.2
350,110 + -0.9
350,118 + 0.6
350,173 - -1.0
350,177 + -0.5
350,264 - 0.2
350,269 + -1.2
350,269 - 0.3
350,275 - 0.2
350,278 + -0.6
350,283 + 0.5
350,290 - -0.9
350,302 + -0.6
350,430 - -2.1
350,474 + -0.1
350,565 - -0.8
350,647 + 1.7
350,650 - -0.0
350,651 + -1.3