Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5279

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5278: 13646 - KOG1488 Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily), at 341492 to 344533 13646 mRNA_5279: 13647 - KOG2231 Predicted E3 ubiquitin ligase, at 344945 to 347664 13647 mRNA_5280: 13648 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 348551 to 349893 13648

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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344,625 - 0.2
345,398 + 13647 mRNA_5279 0.17 -1.7
345,402 + 13647 mRNA_5279 0.17 -1.5
345,512 + 13647 mRNA_5279 0.21 -1.4
345,521 - 13647 mRNA_5279 0.21 -0.4
345,549 - 13647 mRNA_5279 0.22 0.4
345,811 - 13647 mRNA_5279 0.32 0.6
346,032 + 13647 mRNA_5279 0.40 0.1
346,412 - 13647 mRNA_5279 0.54 -0.3
346,675 - 13647 mRNA_5279 0.64 -0.6
346,834 - 13647 mRNA_5279 0.69 -1.1
347,049 + 13647 mRNA_5279 0.77 -1.0
347,059 + 13647 mRNA_5279 0.78 0.4
347,136 - 13647 mRNA_5279 0.81 0.1
347,187 + 13647 mRNA_5279 0.82 0.5
347,241 - 13647 mRNA_5279 0.84 0.3
347,274 - 13647 mRNA_5279 0.86 0.1
347,333 - 13647 mRNA_5279 0.88 -0.3
347,470 - 0.3
347,729 - 1.1
347,796 + -0.9
347,882 + 0.8
347,904 + 0.6
348,210 - 0.9
348,212 - -0.3
348,312 - 0.7
348,347 + -1.1
348,360 + -1.4
348,384 - -0.1