Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5252

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5251: 13619 - K12867 SYF1, XAB2 pre-mRNA-splicing factor SYF1, at 271974 to 275743 13619 mRNA_5252: 13620 - BLAST LPS-assembly protein LptD [Rhizoctonia solani], at 276429 to 278610 13620 mRNA_5253: 13621 - Hypothetical Protein, at 278991 to 279822 13621

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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275,483 - 1.1
275,769 + -0.5
275,775 + 0.1
275,785 + 1.2
275,871 - -0.1
275,949 + -0.5
276,023 + 0.9
276,058 + -1.4
276,115 - 0.9
276,130 - 0.2
276,141 - -0.3
276,152 + 1.5
276,154 - 0.6
276,162 - 0.2
276,176 + -0.2
276,182 + 0.2
276,186 - 0.8
276,187 + -0.1
276,189 + 0.2
276,193 + 0.0
276,205 - 0.5
276,207 - -0.5
276,212 - 1.2
276,225 - -0.2
276,228 + -0.2
276,230 + -0.5
276,338 + 0.1
276,340 - -0.8
276,357 + -0.4
276,381 + -1.1
276,384 + -1.0
276,388 + -0.1
276,507 + 0.4
276,519 - -0.8
276,661 - 13620 mRNA_5252 0.11 -0.9
276,796 - 13620 mRNA_5252 0.17 -0.4
276,933 + 13620 mRNA_5252 0.23 -0.3
276,948 + 13620 mRNA_5252 0.24 -0.6
276,967 + 13620 mRNA_5252 0.25 -0.1
277,043 + 13620 mRNA_5252 0.28 1.3
277,106 + 13620 mRNA_5252 0.31 0.3
277,125 + 13620 mRNA_5252 0.32 -0.2
277,815 - 13620 mRNA_5252 0.64 -0.2
278,541 - 0.4
278,582 - -0.2
278,711 + -0.3
279,552 - 13621 mRNA_5253 0.67 0.7
279,561 - 13621 mRNA_5253 0.69 -0.5