Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5246

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5245: 13613 - KOG2887 Membrane protein involved in ER to Golgi transport, at 253942 to 254889 13613 mRNA_5246: 13614 - K00411 UQCRFS1, RIP1, petA ubiquinol-cytochrome c reductase iron-sulfur subunit, at 255112 to 256642 13614 mRNA_5247: 13615 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 256939 to 258074 13615

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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254,603 - 13613 mRNA_5245 0.70 -1.1
254,754 + 13613 mRNA_5245 0.86 -1.4
254,912 - 0.8
254,914 + 0.4
254,985 - -0.5
255,027 + 0.2
255,061 + -2.3
255,062 + 0.1
255,073 - -1.2
255,074 + -0.4
255,082 - -1.8
255,094 + 0.2
255,105 + -0.1
255,354 - 13614 mRNA_5246 0.16 0.7
256,671 - 2.1
256,993 + -0.1
257,005 - 0.1
257,555 - 13615 mRNA_5247 0.54 1.2
257,584 - 13615 mRNA_5247 0.57 1.5