Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5233

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5232: 13600 - SUPERFAMILY--SSF52047, at 218691 to 220745 13600 mRNA_5233: 13601 - HMMPfam-Transmembrane amino acid transporter protein-PF01490, at 221714 to 224141 13601 mRNA_5234: 13602 - KOG0725 Reductases with broad range of substrate specificities, at 224900 to 226337 13602

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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220,761 + -0.2
220,803 + -0.0
220,809 + -1.1
220,811 - 0.5
220,937 - -1.1
220,942 - 0.1
220,948 + 0.1
220,965 - -0.3
220,965 + 0.6
220,991 + 0.7
220,993 - -0.3
221,027 + 0.7
221,043 - 0.8
221,044 + -0.4
221,062 - -0.5
221,062 - 1.0
221,064 - -1.0
221,072 - -0.1
221,075 - 0.8
221,081 - 0.8
221,094 + -0.4
221,100 - -0.7
221,101 + -1.3
221,102 - 1.4
221,103 + 1.2
221,105 + 0.5
221,106 - 2.3
221,107 + 0.5
221,123 + 0.3
221,136 + 0.1
221,145 - 1.4
221,146 + 0.7
221,152 + -1.1
221,171 + 0.7
221,179 + 1.9
221,191 - 0.2
221,203 - -0.2
221,204 - -0.2
221,217 + -1.3
221,217 - -1.0
221,219 - -0.4
221,249 + 0.1
221,253 - 0.6
221,253 - -0.2
221,295 + 0.4
221,310 - 0.1
221,318 + 0.6
221,350 + -0.0
221,362 + 0.1
221,368 - 0.2
221,370 + -0.7
221,380 + 0.8
221,381 + -0.3
221,396 + 0.6
221,398 - 0.1
221,398 + 1.9
221,405 + 0.3
221,405 + -0.4
221,411 - -1.1
221,411 + 0.5
221,411 - 0.0
221,412 - 0.3
221,415 + -0.1
221,419 + 0.2
221,419 + 0.4
221,431 + -0.6
221,460 + 0.3
221,465 - 0.3
221,477 - -0.4
221,501 + -0.6
221,508 - -0.7
221,530 + 0.5
221,535 - 0.2
221,535 + 0.5
221,540 - 0.0
221,540 + 0.2
221,540 + 0.4
221,547 + -0.2
221,548 + -0.7
221,552 - -0.3
221,552 + -1.3
221,555 - -0.4
221,555 - 0.7
221,558 + -1.0
221,683 + -0.4
221,707 + 0.0
221,710 + -0.3
221,747 - -0.6
221,805 - 0.4
221,838 - -0.3
221,843 + -0.3
221,850 - 0.3
221,948 - 0.9
222,601 - 13601 mRNA_5233 0.37 1.1
222,723 - 13601 mRNA_5233 0.42 0.6
222,877 - 13601 mRNA_5233 0.48 -0.6
223,488 + 13601 mRNA_5233 0.73 0.5
224,559 - -1.1
224,588 - 0.1
224,730 - -0.2
224,754 - 0.6
224,768 - -0.1
224,771 + -0.8
224,812 - 1.9
224,904 + 0.5
225,024 + 0.0
225,038 + 0.1
225,102 + 13602 mRNA_5234 0.14 0.5