Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5226

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5225: 13593 - HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899, at 192628 to 196368 13593 mRNA_5226: 13594 - K12472 EPS15 epidermal growth factor receptor substrate 15, at 196713 to 201520 13594 mRNA_5227: 13595 - K00601 E2.1.2.2 phosphoribosylglycinamide formyltransferase, at 201689 to 202738 13595

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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195,841 + 13593 mRNA_5225 0.86 0.2
195,844 - 13593 mRNA_5225 0.86 0.2
195,871 + 13593 mRNA_5225 0.87 -0.1
195,939 + 13593 mRNA_5225 0.89 0.3
196,229 - 0.3
196,229 - 0.8
196,568 - 0.3
196,726 - 0.6
196,737 + 0.3
196,746 + 1.0
196,860 + 0.5
196,993 - 0.3
197,000 + 0.7
197,011 - -1.4
197,013 - -0.2
197,143 - 1.4
197,281 + 13594 mRNA_5226 0.12 0.4
197,732 - 13594 mRNA_5226 0.21 -1.3
197,928 + 13594 mRNA_5226 0.25 -0.6
198,074 - 13594 mRNA_5226 0.28 -0.9
198,149 - 13594 mRNA_5226 0.30 -0.9
198,198 - 13594 mRNA_5226 0.31 0.3
198,324 - 13594 mRNA_5226 0.34 0.2
198,390 + 13594 mRNA_5226 0.35 -0.1
198,459 + 13594 mRNA_5226 0.36 -0.6
198,520 - 13594 mRNA_5226 0.38 -0.1
198,591 + 13594 mRNA_5226 0.39 0.4
200,000 + 13594 mRNA_5226 0.68 2.1
200,682 + 13594 mRNA_5226 0.83 -0.2
201,036 + 13594 mRNA_5226 0.90 0.2
201,117 + 1.7
201,156 - -0.1
201,311 + -1.5
201,315 - 1.0
201,327 + -2.1
201,430 - -0.2
201,455 + 0.3
201,468 - 1.0
201,594 - -0.7
201,617 + 1.2
201,636 + 0.5
201,912 - 13595 mRNA_5227 0.21 -0.0