Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5223

Experiments: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5222: 13590 - Hypothetical Protein, at 187738 to 188641 13590 mRNA_5223: 13591 - Hypothetical Protein, at 189064 to 190572 13591 mRNA_5224: 13592 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 190897 to 192363 13592

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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188,189 + 13590 mRNA_5222 0.50 -0.8
188,435 + 13590 mRNA_5222 0.77 -1.1
188,604 - 0.3
188,663 + 0.3
188,901 + 3.3
188,973 - -0.8
189,016 - 0.5
189,038 + -0.0
189,041 + 0.0
189,046 - -0.2
189,048 + 1.5
189,227 + 13591 mRNA_5223 0.11 -0.6
189,379 + 13591 mRNA_5223 0.21 0.5
189,453 - 13591 mRNA_5223 0.26 0.0
189,475 - 13591 mRNA_5223 0.27 -0.3
189,490 + 13591 mRNA_5223 0.28 0.2
189,620 - 13591 mRNA_5223 0.37 1.2
189,721 + 13591 mRNA_5223 0.44 -0.2
189,759 - 13591 mRNA_5223 0.46 1.4
189,871 + 13591 mRNA_5223 0.53 -0.2
189,876 - 13591 mRNA_5223 0.54 0.2
189,892 - 13591 mRNA_5223 0.55 0.9
189,895 + 13591 mRNA_5223 0.55 -0.3
190,047 - 13591 mRNA_5223 0.65 0.0
190,069 + 13591 mRNA_5223 0.67 -0.7
190,327 - 13591 mRNA_5223 0.84 -0.2
190,343 + 13591 mRNA_5223 0.85 -0.5
190,385 - 13591 mRNA_5223 0.88 0.3
190,385 - 13591 mRNA_5223 0.88 -0.6
190,403 - 13591 mRNA_5223 0.89 -0.2
190,765 - 0.2
190,771 - 1.0
190,781 - -0.5
190,879 + 1.1
190,941 - 1.0
190,943 + 1.2
190,960 + -0.4
191,055 + 13592 mRNA_5224 0.11 0.1
191,086 + 13592 mRNA_5224 0.13 -0.1
191,096 - 13592 mRNA_5224 0.14 0.4
191,104 - 13592 mRNA_5224 0.14 0.8
191,117 + 13592 mRNA_5224 0.15 0.1
191,197 + 13592 mRNA_5224 0.20 0.1
191,232 - 13592 mRNA_5224 0.23 0.1
191,266 + 13592 mRNA_5224 0.25 -0.4
191,282 + 13592 mRNA_5224 0.26 -0.4